Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1568 89.7 3e-13 seq2907 87.8 9e-13 seq1570 86.0 3e-12 >seq1568 Length=32125 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||| ||| ||| ||||| | | |||||||||| ||||||| ||||||||||||| Sbjct 6760 AATAATAAA--AAACTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCAC 6817 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||| | ||||| Sbjct 6818 CACGCTCTAACCAACTGAGCTAGTCGGCCG 6847 >seq2907 Length=23199 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 23085 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 23026 Query 11515 CTGAGCTAATGGGCCGT 11531 |||||||| | |||||| Sbjct 23025 CTGAGCTAGTCGGCCGT 23009 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 19881 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 19940 Query 11528 CCG 11530 ||| Sbjct 19941 CCG 19943 >seq1570 Length=18624 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 12774 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 12715 Query 11528 CCGT 11531 |||| Sbjct 12714 CCGT 12711 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 17196 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 17255 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| | ||||| Sbjct 17256 CTGAGCTAGTCGGCCG 17271 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261460452557248