Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6760 107 3e-19 seq8732 102 1e-17 seq64 89.7 8e-14 seq4873 87.8 3e-13 >seq6760 Length=2563 Score = 107 bits (118), Expect = 3e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| |||||||| || ||||||||||| ||||||||| ||||||| || |||| || Sbjct 624 GCTATTCGTCGTCTAGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTGATCTACGAG 565 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| |||| ||| |||||||||||||| ||| ||| |||| || | || || Sbjct 564 GAGACGCGTGGTGTCCTGAAGATCTTCCTCGAGAACGTCATCCGCGACTCCGTCACTTAC 505 Query 16607 ACCGAGCACGCTAA 16620 || |||||||| || Sbjct 504 ACTGAGCACGCAAA 491 >seq8732 Length=2319 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || |||||||| |||||||| ||||| ||||||||| |||| Sbjct 1688 AGGTATCACAAAGCCCGCCATTCGTCGTCTCGCTCGTCGGGGTGGTGTCAAGCGTATCTC 1747 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | |||| || |||| ||| | |||| | ||||||||||| ||| ||| Sbjct 1748 TGGTCTCATCTACGAGGAGACTCGCGGTGTTCTCAAGATCTTCCTGGAGAACGT 1801 >seq64 Length=80141 Score = 89.7 bits (98), Expect = 8e-14 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || || ||||| || ||||||||||| || |||||| |||| Sbjct 41922 AGGCATCACGAAGCCTGCCATTCGCCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 41981 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||||||| |||| ||||| || | ||||| |||||| ||| ||| Sbjct 41982 CGGTCTCATCTATGAGGAGACTCGTGGGGTGCTCAAGATTTTCCTCGAGAACGT 42035 >seq4873 Length=6403 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || ||||||||||| ||||||||||| || || |||||| ||||||| | ||||||| Sbjct 5497 GCCATCCGTCGTCTCGCTCGTCGTGGCGGTGTGAAGCGTATCTCTGGCCTTATCTATGAG 5438 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||| | ||||| |||||| ||| ||| Sbjct 5437 GAGACCCGTGGTGTCCTCAAGATATTCCTCGAGAACGT 5400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066378766064