Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 4e-15 >seq38 Length=96116 Score = 96.9 bits (106), Expect = 4e-15 Identities = 281/429 (66%), Gaps = 3/429 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||||| ||||||||||| || || || ||||| || ||||| | Sbjct 72647 ACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAA 72588 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| | || ||||| || ||||| || |||| ||||| || || || ||||| Sbjct 72587 CCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAA 72528 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG-GCGCT-GTCATG 33479 | || || ||||| ||||| || | || ||||| || | || | |||| ||| | Sbjct 72527 CACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGCTCGTCCTC 72468 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||| || |||||||| | ||| || || || || ||||| | Sbjct 72467 AATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCGTC 72408 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || || | |||| || || | ||| || ||||| | || ||| | Sbjct 72407 GAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTACGT 72348 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||||| || | || || || ||||| || || || || || | ||||||| Sbjct 72347 CTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCATAAAAGCAGCGCGCCTCGGCGGC 72288 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 |||||| || || | || || || | | ||| || ||||| || ||||| ||| || Sbjct 72287 CTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCGGC 72228 Query 33720 AAAAAACGC 33728 || || || Sbjct 72227 GAAGAAAGC 72219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622872072567680