Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3971 113 3e-20 seq2268 104 2e-17 seq1153 82.4 5e-11 >seq3971 Length=41844 Score = 113 bits (124), Expect = 3e-20 Identities = 182/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| | ||||| || || || || || || || |||||| ||||||| | || || | Sbjct 1686 CCAAGATTGAGGGCAAAGGCAATGGCATCAAGACTGTCATTCCCAACATGTCCGACGTGG 1627 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | || ||| | | || ||||||| || || || | ||||||||||| || |||| Sbjct 1626 CGCGCGCCCTCAGTAGGCCGCCCACCTATCCCACCAAGTTCTTCGGGTGCGAGCTCGGCG 1567 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 |||||||| || || | || ||||| |||| |||||| ||||| ||||| || | Sbjct 1566 CTCAGACGTCCTTCGACGAGAAGAACGACCGCTACATCGTGAACGGGGCGCATGACGCCA 1507 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 ||||||| || ||||||| | || || ||||| || || || || |||| Sbjct 1506 AAAAGCTGCGCGAGCTACTTGATGTTTTCATCGAGAAGTTCGTACTTTGCAAGGCATGCA 1447 Query 6472 ATAACCCGGAGACCGAGCTTAT 6493 | || || ||||| || || || Sbjct 1446 AGAATCCCGAGACGGACCTCAT 1425 >seq2268 Length=2405 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| | Sbjct 1475 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGGACTTGTTCGCTATCGGTCTCTC 1416 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1415 GCCAATATTTAGCTTTA 1399 >seq1153 Length=45894 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 38108 CACCAAA-TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| ||||| ||||||||||| || || ||||| || ||||| || | || | Sbjct 2303 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCT 2362 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | | || || || || || || || || || || |||| |||| ||| || |||||| Sbjct 2363 CAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 2422 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| || |||||| || | || || || | || || || | || || || | Sbjct 2423 GAATCTTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCT 2482 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | |||||||| || || || || ||||||||| Sbjct 2483 TCCCCGTCAACGTCTTGACAAAGATCTGCATG 2514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334907815233488