Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq38 203 4e-47 >seq38 Length=96116 Score = 203 bits (224), Expect = 4e-47 Identities = 384/563 (68%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 |||||||| |||||||| || | || ||||| || || || | ||||||| ||| || Sbjct 70045 AAGCACGCGAAGTCGGTGTGCATGCCCTCGTCACGCGAGATAAGCTCATTGGAGAACGTG 70104 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | ||| || || ||||||||||| || || || ||||| |||||| || Sbjct 70105 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAG 70164 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || ||||| ||||| || || || ||||| | || || || || ||||| | || Sbjct 70165 AAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCGAA---GGCGGACTCCTTG 70221 Query 93269 ---CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 |||||| | |||||||| || || || ||||| || ||||| | || ||||| Sbjct 70222 TCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGAATCGTCTCGATG 70281 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 |||| || |||| || |||| | | ||| ||||| || ||||| | ||| || Sbjct 70282 GCGTCGAAAAGGTGCTCGCGCTGCTTGGGATCCTTGATGTACGTGTCGATGAGCAGCGAG 70341 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 || | || || |||| |||||||| || ||||| |||||||| || | || || Sbjct 70342 TATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGCCTCG 70401 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | | ||| || || | || || | ||| || || || || || || || || || || Sbjct 70402 GCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCACGATGCCGTCCGAG 70461 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTA 93562 || || || || || | | ||| || ||||| |||||| || || | | || Sbjct 70462 GCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGTCGTTGAGGCGGTTG 70521 Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 | ||||||| || || || ||||| || | || ||| ||||||| || || || || Sbjct 70522 TTCCAATCGTGGAGGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCCAGAATGAAGCCTCA 70581 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 || || |||||||| | ||| || Sbjct 70582 GCCTTCTTGTACATCTGCCAAAT 70604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556793642587520