Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7597 125 6e-24 seq1153 114 1e-20 >seq7597 Length=53330 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| ||||| || || | | Sbjct 51331 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTTGAGTCGTCA 51390 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| |||||||||||||| || ||||| || Sbjct 51391 GACACCATTGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 51450 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 51451 CAACGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCAGACTACAAC 51510 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | ||| Sbjct 51511 ATCCAGAAGGAGTCTACCCTCCAT 51534 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| || || |||||||||| || ||| || || Sbjct 51559 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCC 51618 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || ||||| ||||||||||| ||||| || ||||| Sbjct 51619 GATACCATCGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 51678 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | |||||| || ||| | |||||||||||| Sbjct 51679 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGGACCTTGTCCGATTACAAC 51738 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 51739 ATCCAGAAGGAGTCCAC 51755 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| ||||| || || | | Sbjct 51840 ATGCAAATCTTCGTGAAGACGTTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCG 51899 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || |||||||||||||| || || ||||| || Sbjct 51900 GATACCATCGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 51959 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||| | ||||| ||| ||| | || ||||||||| Sbjct 51960 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGTACCTTGTCGGATTACAAC 52019 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || || || | || ||||| || || Sbjct 52020 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGCTTGCGTGGTGG 52066 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || | || || || | || Sbjct 52068 ATGCAGATCTTTGTCAAGACCCTTACGGGAAAGACCATTACGTTGGAGGTCGAGTCTTCC 52127 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| || || || ||||| Sbjct 52128 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAG 52187 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||||| ||||| || || ||||||| |||||| Sbjct 52188 CAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGGCGTACGCTCTCCGACTACAAC 52247 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | ||| | || |||| Sbjct 52248 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCG 52282 >seq1153 Length=45894 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||| | ||||| || || ||||||| || || || | | Sbjct 1997 ATGCAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCG 1938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || |||||||||||||| || ||||| || Sbjct 1937 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 1878 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| |||||| | || || |||||| Sbjct 1877 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAAC 1818 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 1817 ATCCAGAAGGAGTCGACC 1800 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || |||| || || || || | | Sbjct 2792 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 2733 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || |||||||||||||| || || || || Sbjct 2732 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 2673 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || | |||||| || ||| |||||||||| ||| Sbjct 2672 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGTCGTACCCTCTCCGATTATAAC 2613 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 2612 ATTCAGAAGGA 2602 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || ||||||| || || || | || Sbjct 2513 ATGCAGATCTTTGTCAAGACGTTGACGGGGAAGACCATCACTCTCGAGGTCGAGTCTTCC 2454 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| ||||||||||| || || ||||| || Sbjct 2453 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 2394 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | ||||| |||||| Sbjct 2393 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAAC 2334 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 2333 ATCCAGAAGGA 2323 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| ||| |||| | || || ||| | | Sbjct 2225 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCTTGGAGGTTGAATCGTCG 2166 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||| || || || ||||||||||| || || || || Sbjct 2165 GATACAATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 2106 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| || | ||||| |||||| |||| || |||||| Sbjct 2105 CAGCGCCTGATCTTTGCTGGCAAGCAACTCGAGGACGGCCGCACGCTCTCTGACTACAAC 2046 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 2045 ATTCAGAAGGAGTCGAC 2029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 ||||||| ||||| || || |||||||| || ||||| || ||| | ||||| ||||| Sbjct 2917 GTATTCCTCCCGACCAGCAGCGTCTTATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGCA 2858 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCG 22441 | | || || ||||||||||| ||||| ||||| | ||| | || | || | |||| Sbjct 2857 CTCTTTCTGACTACAACATTCAGAAAGAGTCCACGCTTCATCTCGTCCTCCGTCTTCGCG 2798 Query 22442 GAGGT 22446 ||||| Sbjct 2797 GAGGT 2793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419678646283120