Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2779 109 1e-18 seq5722 107 4e-18 seq38 98.7 2e-15 >seq2779 Length=81362 Score = 109 bits (120), Expect = 1e-18 Identities = 243/364 (67%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||||||||| | || ||||| || ||| | |||| ||||||||| || || | Sbjct 30294 AGGTCGCTCAACTCGTCGGCTATGTGTCTGAAGTCTCTGCCTACCATCATGGCGAAGCTA 30353 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 | || || ||||| | | | || ||||||| || |||||||||||||||||| Sbjct 30354 GCTTGATGGCGACCATTATCAACCTTGCGCAGGACTTCGTCGGCAGTAACAACATGAACC 30413 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTG 218836 |||| | || ||||||||||| ||| ||||| |||||| ||||| || | | Sbjct 30414 TGCTTATGCCGAACGGTCAGTTCGGTACTCGTGACCAGGGTGGCAAGGACCACGCCGCGG 30473 Query 218837 CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATG 218896 | | ||||||||||| | || | ||| | | || | ||| | ||| || |||| Sbjct 30474 CTCGTTATATCTTTACCGAACTGGCACCCATCATCCGGAACGTGATGCATCCTGCGGATG 30533 Query 218897 ATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGC 218956 | | |||| | || | |||| ||||| | | |||||||||||||| ||| Sbjct 30534 ACGCTATCCTCACCTACCAGCAGGATGATGGCAGAGCCGTCGAGCCCGAGTGGTACATGC 30593 Query 218957 CTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTG 219016 | || ||| | |||| || ||||| || | ||||| || || || | ||| | | Sbjct 30594 CCATCATCCCGATGGTGCTTGTGAATGGCGCGGAGGGTATTGGCACCGG--TGAGTTCCG 30651 Query 219017 ACAT 219020 |||| Sbjct 30652 ACAT 30655 >seq5722 Length=5498 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 ||||| |||||||||||||||||||| || || | ||||| || || | || || Sbjct 4017 CTGTCTGGTGGTTGGAAGATGAAGCTTGCACTTGCCCGCGCGATGCTCTTCAAGGCTGAC 3958 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 | || || ||||||||||| ||||||||| ||||| |||||| || ||||| | | Sbjct 3957 ATTCTTCTCCTTGATGAGCCTACCAACCACTTGGACGTTGTCAACGTCGCTTGGCTCGAG 3898 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| ||||| || ||| | || |||| ||||| |||||||| |||||| Sbjct 3897 AACTACCTCACCAGCCTCCAGACCTGCACGTCAATCATCGTCTCGCACGACTCCGGCTTC 3838 Query 279885 CT 279886 || Sbjct 3837 CT 3836 >seq38 Length=96116 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| || |||||||||||||| ||||| ||| Sbjct 72970 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATGAGGTCCATGAAGTCGAACGGGTTCGTG 72911 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| ||||| | || || || |||| | ||||| || || ||||| | | Sbjct 72910 GCGCGGTAGTGCTTCTCGTTCCCGAGCGCGACGAGCAGACGGTCCGCTACGAACTCGATA 72851 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | ||| || || | ||||||||| || Sbjct 72850 TACTGGCACATGAGGTCGGCGTTCATGCCGAT 72819 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||||| ||||| ||||| || Sbjct 69730 TCGAAGAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATGAAATCGAACGGGTTGGTC 69789 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | ||| || ||| || || |||| | || || || || ||||| | Sbjct 69790 ACGTTGTAGTACTTCTCATCGCCGAGAGCGACGAGAAGACGATCAGCGACGAACTCGATG 69849 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | ||| || | ||||||||||| || Sbjct 69850 TACTGGCACATGAGCTTCGAGTTCATGCCGAT 69881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027709743953968