Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq38 268 2e-66 seq5619 125 1e-23 >seq38 Length=96116 Score = 268 bits (296), Expect = 2e-66 Identities = 455/651 (70%), Gaps = 30/651 (5%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| ||||||||||| ||||| |||||||| Sbjct 70595 ATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTTTCCAAGGAC 70536 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAGTTT---TTCCTCAAAAACATACT 42424 | | | | ||| || | || | |||| || | ||| || || | || Sbjct 70535 -CTCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCGCACGTGCT 70477 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||||| |||||||| || || |||||||| | | ||||| || Sbjct 70476 CGCCTTCTTCGCTGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGGTTCTCCAA 70417 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| | ||||| ||||||||||||||||||||||| || |||||| | Sbjct 70416 TGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 70357 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||| ||| | ||||||| ||||||||||| ||||||| |||| Sbjct 70356 CCACTCGGAGACATACTCG---CTGCTCATCGACACGTACATCAAGGATCCCAAGCAGCG 70300 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || ||| | ||||| |||||||| || |||||||||||||||||||||||||| Sbjct 70299 CGAGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGACTGGGC 70240 Query 42662 GCTCAACTGGATC---GA----GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | |||||||| || |||||| | |||| ||| |||| || || | Sbjct 70239 TTTGCACTGGATCTCTGACAAGGAGTCC-------GCCTTCGCGGAGCGGCTCGTGGCTT 70187 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | || || ||||| ||||||||||| || |||| ||||||||||||||||||||| Sbjct 70186 TCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGA 70127 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | ||||||||| ||||| ||||| || || || ||| | |||||||| Sbjct 70126 AGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGCA 70067 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAG 42893 |||| | ||||| || ||| | || ||| || || |||| | | |||| | | Sbjct 70066 TGCACACCGACTTCGCGTGCTTGCTTTTC---AGTCATCTCAAG-AGGCGCCCCCACCCG 70011 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 ||| |||| |||||||| ||||| || | |||||| |||||||| Sbjct 70010 GAGATCATCCGTCAAATCATCACTGAGGCGGTCGCTATCGAGCAGGAGTTC 69960 Score = 268 bits (296), Expect = 2e-66 Identities = 387/538 (72%), Gaps = 25/538 (5%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| |||||||| || || ||||| || | | ||||| Sbjct 72216 CTTGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAGCGGTTCTCT 72275 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| | |||||||||||||| || ||||||||||| || ||||| Sbjct 72276 AACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTATGGCTTCCAGATCATGATCGAGAAT 72335 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 |||||||| ||| |||| | ||||||| ||||||| ||| ||| |||| || Sbjct 72336 GTGCACTCGGAGACGTACTC---GCTGCTCATCGACACGTATATCAAGGACCCCGCTGAA 72392 Query 42600 CGTAACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || || | |||||| | ||||| || || || || || ||| |||||||||||| Sbjct 72393 CG---CGCGTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGGCGGAC 72449 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCT 42714 |||||| | |||||| ||| | | | || || ||| | ||||||||||| || | Sbjct 72450 TGGGCGTTGCGCTGGATTGAG-GACGAG-CGTTCAGTGTTTGCGGAGAGGCTGGTCGCAT 72507 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || | || ||||||||| | |||||||| || | |||||| |||| |||||||| ||| Sbjct 72508 TTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTGAAGA 72567 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || || || |||||| || | || ||||| ||||| || |||||| | |||||||| Sbjct 72568 AGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAGGGTA 72627 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA---GCCCTCGA 42891 |||| | |||||||| || ||||| ||| ||| || ||| || || | ||| Sbjct 72628 TGCACACCGACTTTGCGTGTCTCCTCTTC---CACCATCTGCGGCGAAAACCGCACCCGA 72684 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 |||| || | | |||| | || ||||| || ||||| || |||||||||||||| Sbjct 72685 ---AGCGCGTGCTGCGCATCGTAACTGAGGCAGTAGAGATTGAAAAGGAGTTCCTCAC 72739 >seq5619 Length=11060 Score = 125 bits (138), Expect = 1e-23 Identities = 326/496 (66%), Gaps = 22/496 (4%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355 ||||| | |||| | || ||| |||| | |||| |||||||||| ||| ||| || Sbjct 2051 CCCCATAGGTCATATTGGAGCTTGCCCTCG--GACGCTGGGCTGCCCTGGTACGTCTCGT 2108 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCT 244415 | || || || |||| || ||||||| | || | ||||| | ||||||||| | Sbjct 2109 AAGGGCCAAACTCCTTCGCCATCTCACAGCTCGCTTCAACAGCGGCATGGTAGATGGTTT 2168 Query 244416 CGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCA 244475 |||||||| | ||| | ||| |||| | || || || |||| || || Sbjct 2169 CGAAGATCTGCAGGTTGAGCCTGCGTGCCTCGGGCGAGTCAAACGGCATGCGCAGGGCCA 2228 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 |||| |||||||||| |||||||||||||| |||||||| | ||| ||| ||||||| | Sbjct 2229 TGAACGCGTCGGCCAGACCCTGCACGCCGATTCCGATGGGGCGGTGGCGCATGTTGGAAC 2288 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 | || || || | || || |||| ||||||| | ||| |||||| | || Sbjct 2289 GACGCGCCTCCGGAATAGGATAGTGGTTGACGTCGATGATGCGGTTCAGGTTGAACGCGA 2348 Query 244596 TCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 || | |||||| || | ||| || | |||| | | || |||| || || Sbjct 2349 CCACCTTGGTCACGTCGTGCAACTTCTGGAAATTGTAC---TTGCCATTCTCGATGAAGG 2405 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 || ||| |||| || || |||||||| ||| ||| || | Sbjct 2406 --------AC-------GGGAGCGCGATAGACGCGAGATTGCAGACAGCCGTCTCATCGG 2450 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 | ||||| |||||||||||||||||| || ||||||| ||||| |||| || Sbjct 2451 GAGACGAGTACTCGACAATCTCGGTGCAGAGATTGGACGACTTGATCGTGCCGAGGTTCT 2510 Query 244776 GGTGATTGGACTTGGC 244791 | || || |||||||| Sbjct 2511 GCTGGTTTGACTTGGC 2526 Score = 102 bits (112), Expect = 2e-16 Identities = 168/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || |||||||| | |||||| || | ||| | ||| | | | | || || |||| Sbjct 2858 AAAAGGTCGGGCACCCAGAGAGCGTAGAATAAGTCACGTGCACGCACTTCTTCTTTGCCA 2917 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || || | || ||||||||||| | ||||| ||||| | |||||| Sbjct 2918 TGGTTCTTACGAAGGTCAAGGAATTCAAAGACGTCTCCATGCCATGGCTCGACGTAGACG 2977 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 || | || ||||| || |||||||| ||||| || | | | ||||| |||| Sbjct 2978 GCAAAAGCTCCGGGTCGTTTGTTGCCACCCTGATCGA----CATAGCGAGCGGTGGCGTC 3033 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||| | ||| || | ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 3034 GAACACGCGTAGCATCGGCACAATGCCGTTTGAGTAACCGTTTGTGCCAGCGATGTAGGA 3093 Query 245251 GC 245252 || Sbjct 3094 GC 3095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944225312692480