Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1153 134 3e-26 seq7597 125 2e-23 seq38 102 2e-16 >seq1153 Length=45894 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| ||||| |||| || || || ||||| || ||||| | Sbjct 1771 CCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1830 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 1831 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1890 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| ||||| || || || | || ||| || || Sbjct 1891 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACC 1950 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 1951 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || || || || ||||| | | Sbjct 1999 CCACCACGGAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAG 2058 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | ||| || || || |||||||| ||||| || ||| Sbjct 2059 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 2118 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | ||| |||||| || Sbjct 2119 ATACCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACGATTCAACC 2178 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| || || || ||||||||||| || ||||| Sbjct 2179 TCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || |||| ||||| || || ||||| || ||||||| | ||||| || || || | Sbjct 2308 AGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGC 2367 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||||||||||||||| || ||||| || || || ||||| || Sbjct 2368 TGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATC 2427 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| |||||||| || || | ||| || || || ||||| ||||| |||||||| Sbjct 2428 TTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCC 2487 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||||| || |||||||| Sbjct 2488 GTCAACGTCTTGACAAAGATCTGCAT 2513 >seq7597 Length=53330 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||| | || || || ||||| || ||||| | | Sbjct 51557 CCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 51498 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||||||| || | || || || |||||||| ||||| || || ||| Sbjct 51497 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGG 51438 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||||| || ||||| || || | || ||| || || Sbjct 51437 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAACC 51378 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| || || ||||||||||| |||||||| Sbjct 51377 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 >seq38 Length=96116 Score = 102 bits (112), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 ||||| |||||||| | | ||||| ||||| | | |||||| || || ||||| Sbjct 69902 GACGCGCTCCCATGTGCCCTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAG 69843 Query 269191 TTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGA 269248 ||||| ||||||||| |||| || || ||||| ||||||| ||||| || | Sbjct 69842 TTCGTCGCTGATCGT--CTTCTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGACCA 69785 Query 269249 ATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGC 269308 | || |||| || ||||| | || |||||| | || ||||| ||||||||||| |||| Sbjct 69784 ACCCGTTCGATTTCATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGC 69725 Query 269309 GTGTCAGCGACTAT 269322 | || ||||||| Sbjct 69724 GGGTGTCCGACTAT 69711 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| ||||| ||||| |||||| || |||||||| ||||| || || ||| | || Sbjct 72819 ATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCTGCTC 72878 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || ||||| | ||||| ||| | | ||| || |||| ||| ||||| || Sbjct 72879 GTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGACCTC 72938 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321 || |||||| | || ||||| ||||||||||| || || ||| ||| || Sbjct 72939 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTCTCCGAGTA 72988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179508577021344