Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq38 114 3e-20 seq2779 84.2 5e-11 seq1284 84.2 5e-11 >seq38 Length=96116 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | || |||||| | ||||| ||||| |||||||| ||||| | Sbjct 72815 GCTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCT 72874 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | ||||| ||| | ||| |||||| || | ||| ||||| Sbjct 72875 GCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGA 72934 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 ||||| ||||| || || || || ||||||||||| || || ||| Sbjct 72935 CCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTC 72980 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 ||||| | ||||| || || ||||||||||| | |||||| | ||||||||||| Sbjct 69902 GACGCGCTCCCATGTGCCCTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAG 69843 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| || || || || || |||| || || ||||||| |||||| | ||| Sbjct 69842 TTCGTCGCTGATCGTCTTCTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGACCAAC 69783 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || || | || ||||| | || ||||| || || || || ||||||||||| ||||| Sbjct 69782 CCGTTCGATTTCATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGG 69723 Query 243724 GT 243725 || Sbjct 69722 GT 69721 >seq2779 Length=81362 Score = 84.2 bits (92), Expect = 5e-11 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA--A 297487 ||||| || || ||||| || || ||||| ||||| |||||||| || ||| | Sbjct 30496 CAGTTCGGTAAAGATATAACGAGCCGCGGCGTGGTCCTTGCCACCCTGG--TCACGAGTA 30439 Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 |||||||| || | ||||| | | ||| ||||| || || ||||| | ||||| ||| Sbjct 30438 CCGAACTGACCGTTCGGCATAAGCAGGTTCATGTTGTTACTGCCGACGAAGTCCTGCGCA 30379 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGAT-GCTTCGCCATGGTGATAGGC 297594 ||||| | |||||| | || || | ||||||||||| || ||||| Sbjct 30378 AGGTTGATAATGGTCGCCATCA-AGCTAGCTTCGCCATGATGGTAGGC 30332 >seq1284 Length=4388 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 59873 GAGGGTGCGTTGAAACTCAAAGAAATCTCGTATATTCACGCAGAGGGGTTCCTGGGAGGC 59932 ||||| ||| | || |||| || ||||||||||| ||| | ||||| |||| | ||| Sbjct 957 GAGGGCGCGCTCAAGATCAAGGAGATCTCGTATATGCACTCGGAGGGCATCCTCGCCGGC 898 Query 59933 GAGTTGAAACACGGTCCCCTCGCACTCCTCGACGATAAAATCCCCGTCATC 59983 ||| | |||||||| || ||||| ||| ||||||| || || || || ||| Sbjct 897 GAGCTCAAACACGGCCCGCTCGCGCTCATCGACGAGAACATGCCGGTGATC 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102743667488800