Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1153 122 9e-23 seq7597 111 2e-19 seq6239 86.0 6e-12 seq2399 82.4 8e-11 >seq1153 Length=45894 Score = 122 bits (134), Expect = 9e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || |||| ||||| || || || |||||||| || | Sbjct 1770 ACCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1829 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| |||||||||||||| || Sbjct 1830 AAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 1889 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || || || || || || || || ||| ||| || | || | ||| || || Sbjct 1890 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGT--CCGACGACTCG 1947 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| | |||||||||||||| ||| || ||||| |||||||| Sbjct 1948 ACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 102 bits (112), Expect = 8e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || ||||||||||| || | || ||||| |||| Sbjct 2014 AGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCC 2073 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| ||| | || || ||||||||||| ||||| || || || || || Sbjct 2074 TCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTATCC 2133 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || ||| ||| || || | ||||| ||| || || || || | || | | Sbjct 2134 TGGATCTTTGCCTTGACGTTGTCGATTGTAT--CCGACGATTCAACCTCCAAGGTGATCG 2191 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || || | || || ||||| |||||||| Sbjct 2192 TCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 100 bits (110), Expect = 3e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||| ||||| | || ||| || | || || || |||||||| ||| | Sbjct 2602 TCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCAGCAAAG 2661 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||||||||| ||||| || || || || || || || || ||| ||| Sbjct 2662 ATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTG 2721 Query 64373 TCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 || | || | ||| || || || || | || | |||||||||||||||||| || | Sbjct 2722 TCGATGGTGT--CCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGA 2779 Query 64431 CGAAAATTTGCAT 64443 | || || ||||| Sbjct 2780 CAAAGATCTGCAT 2792 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||||| ||| || ||||| ||||||||||| || | Sbjct 2793 ACCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCAGA 2852 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| ||||||||||| ||||| | || || ||||||||||||||||| Sbjct 2853 AAGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 2912 Query 64336 AAT 64338 ||| Sbjct 2913 AAT 2915 >seq7597 Length=53330 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | || || | |||| ||||| || || || ||||||||||| | Sbjct 52066 CCACCACGCAAGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 52007 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| || |||||||| || || | || || ||||||||||||||||| Sbjct 52006 AAGGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 51947 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCA 64394 || || || || ||||| || || ||| || || | |||| ||| || || | Sbjct 51946 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTATCGATGGTAT--CCGACGACTCGA 51889 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| ||||| || || ||||| |||||||| Sbjct 51888 CCTCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCAT 51840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || ||||| |||| || || ||||| || |||||||| || | || |||||| ||||| Sbjct 51314 AGGACTAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCT 51255 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 || ||||||||||| ||| | || || ||||||||||| ||||| || Sbjct 51254 TCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGAGGGAT 51208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | | ||| ||| | || |||||||||||||| Sbjct 51755 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAAGCTGCTTGCCA 51696 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || ||||| || || || || || || || |||| Sbjct 51695 GCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTT 51636 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||| || || || || | ||| | ||||||||||| | ||| Sbjct 51635 ACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTAAGCGTT 51576 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 51575 TTCACGAAGATCTGCAT 51559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||| | || || || || || |||||||| |||| Sbjct 51558 ACCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGA 51499 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || |||||||||||||| | || || || |||||||||||||| Sbjct 51498 GAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGG 51439 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 51438 GATACCCTCCTTGTCCTGAATCTT 51415 >seq6239 Length=75403 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || || |||||| | || ||||||||||||||| Sbjct 57503 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 57562 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 ||| | || || |||||||||||||| ||||| Sbjct 57563 GCAAAGATCAGACGCTGCTGGTCGGGGGGAAT 57594 >seq2399 Length=624 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| || || | || || || || || |||||||| || Sbjct 443 ACCACCACGCAGACGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 384 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || ||||||||||| || | || || |||||||||||||| || Sbjct 383 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGG 324 Query 64336 AAT 64338 ||| Sbjct 323 AAT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499584542837120