Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq38 123 2e-23 seq7597 104 2e-17 seq1153 93.3 4e-14 >seq38 Length=96116 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 |||||||||||| ||| | ||||||||||| | ||||||| |||| |||||||| Sbjct 72801 GCGCTGCCGGTCTCGCTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTC 72860 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || ||||| |||||| | || ||||||| | ||| ||| | ||| || ||| Sbjct 72861 GTAGCGGACCGTCTGCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCG 72920 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || || ||| || ||| ||||| |||||||||||||||| |||||||| || ||| Sbjct 72921 TTCGACTTCATGGACCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTC 72980 Query 52830 GGCGAGTA 52837 |||||| Sbjct 72981 TCCGAGTA 72988 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 ||||||||| || || ||||||| ||||||||||||| || || |||||||| | || Sbjct 69878 GGCATGAACTCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCGTC 69819 Query 52731 CAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 ||||| | ||||||| ||||| ||| ||||| || || ||| ||| || Sbjct 69818 GCTCTCGGCGATGAGAAGTACTACAACGTGACCAACCCGTTCGATTTCATGGACATGATC 69759 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| |||||||||| ||||| ||||||||||| || Sbjct 69758 TCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGGGT 69721 >seq7597 Length=53330 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 51557 CCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 51498 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| ||||| || ||||| ||||| Sbjct 51497 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGG 51438 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | |||||| | |||||| | Sbjct 51437 ATACCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTG-TCAATGGTGTCTGACGACTCAA 51380 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||| || || || || || || || |||||||||||| Sbjct 51379 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 51330 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || | ||| | | | |||||||| || |||||||||||| Sbjct 52295 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 52236 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| |||||| | || || || | |||| || ||||| || |||||||| Sbjct 52235 GAGCGTACGCCCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGG 52176 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| ||||| || Sbjct 52175 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGAC 52116 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | ||| | || || || || || || || ||||| ||||||||| Sbjct 52115 CTCCAACGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATG 52067 >seq1153 Length=45894 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||| || || |||| Sbjct 1804 GACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 1863 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || ||||| || ||||| ||| || || | | Sbjct 1864 AAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACA 1923 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | |||||| ||||||| || | || || || |||||||| || Sbjct 1924 TTG-TCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTT 1982 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 1983 AACGAAGATTTGCAT 1997 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || |||||||||||| || || | | Sbjct 2032 GACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCA 2091 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||||||||| ||||| || || || ||| ||| || | Sbjct 2092 AAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTGACG 2151 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | ||| || ||||| | || | ||| ||||| || || || || Sbjct 2152 TTGTCGATTGTATCCGACGATTCAACCTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTG 2211 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 2212 ACGAAGATTTGCAT 2225 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| || || || ||||| || || || || | | Sbjct 2322 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 2381 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| |||||||| ||||| || || || || || ||||| ||| | || | || | | Sbjct 2382 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACGT 2440 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||||| ||||| ||||||| || | || || || |||| || || Sbjct 2441 TG-TCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGTCTTG 2499 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 2500 ACAAAGATCTGCATG 2514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496202550754560