Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1153 118 1e-21 seq7597 116 4e-21 seq38 96.9 3e-15 >seq1153 Length=45894 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| || |||||| ||| || ||||| || |||||| | Sbjct 2322 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 2381 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||| |||||||| ||||| || ||||||||||||||| || ||| ||| | ||| Sbjct 2382 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 2441 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||| | | |||||| |||| || | || || || |||| || || | Sbjct 2442 G-TCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGTCTTGA 2500 Query 127101 CAAAAATCTGCATG 127114 |||| ||||||||| Sbjct 2501 CAAAGATCTGCATG 2514 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||||| || | || | || | || ||||| || || || ||||| || Sbjct 1771 CCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1830 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 1831 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1890 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | |||| |||||||| |||||| Sbjct 1891 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACC 1950 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||||||||| || || || || ||||| Sbjct 1951 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| || |||||| | || ||| ||| || || || || ||||| | Sbjct 2601 CTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCAGCAAA 2660 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | |||||||| || ||||| || |||||||||||| ||| || ||| | | Sbjct 2661 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATT 2720 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||||| |||||| |||| ||| | || |||||||||| ||| || || Sbjct 2721 GTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGAC 2780 Query 127102 AAAAATCTGCAT 127113 ||| |||||||| Sbjct 2781 AAAGATCTGCAT 2792 >seq7597 Length=53330 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| || || || ||| || ||||| || ||| Sbjct 51755 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAAGCTGCTTGCCA 51696 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||||||||| || || ||||||||||||||| || ||| ||| Sbjct 51695 GCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTT 51636 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | ||||| || | || | || |||||||| || || Sbjct 51635 ACGTTG-TCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTAAGCGT 51577 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || |||||||| Sbjct 51576 TTTCACGAAGATCTGCAT 51559 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | ||||| || | || ||||| || || || |||||||| | Sbjct 52066 CCACCACGCAAGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 52007 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||||||| |||| | |||||||| |||||||| Sbjct 52006 AAGGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 51947 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| ||| ||| | | |||| ||| |||| |||||| Sbjct 51946 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACTCGACC 51887 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | || ||||| |||| || || || || || |||||| || Sbjct 51886 TCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCATGCCT 51836 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| || || || ||||| ||| | ||| || Sbjct 52282 CGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGCCCG 52223 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || || ||| |||| | ||||||||||| ||||| |||||||||||| Sbjct 52222 TCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTG 52163 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| ||||| | | |||||| || | || | Sbjct 52162 TCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCGGAAGACTCGACCTCCAACGTAAT 52104 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || || || ||||| ||||||||| Sbjct 52103 GGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATG 52067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 51527 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCG 51468 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||||| |||||||| || |||||||||||| || ||| |||| Sbjct 51467 GCGAAGATAAGACGTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 51408 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||| | ||| || || | ||| | ||| || || || || || Sbjct 51407 ACGTTGT-CAATGGTGTCTGACGACTCAACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 51349 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 51348 CTTGACGAAAATCTGCATG 51330 >seq38 Length=96116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 47388 GAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAA 47447 ||||| ||||| | || | | || |||||||| || | ||| | |||| ||||| Sbjct 72798 GAGGCGCTGCCGGTCTCGCTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAG 72857 Query 47448 TTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAAT 47507 || || || ||||| |||||||| ||| | | ||| |||| | || ||| Sbjct 72858 TTCGTAGCGGACCGTCTGCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAAC 72917 Query 47508 CCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGC 47567 || ||||| || ||| || ||| |||||| |||||||||||||||| |||||||| ||| Sbjct 72918 CCGTTCGACTTCATGGACCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGC 72977 Query 47568 GTCGGCGAATA 47578 ||| ||| || Sbjct 72978 GTCTCCGAGTA 72988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475443454603520