Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 145 9e-30 >seq38 Length=96116 Score = 145 bits (160), Expect = 9e-30 Identities = 344/508 (68%), Gaps = 19/508 (4%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||||||||| ||||| || ||||| ||||| ||||| ||||| || || |||||| Sbjct 70069 CCCTCGTCACGCGAGATAAGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTC 70128 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||| || |||||||||||||| ||||||||| |||||| Sbjct 70129 TTGAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAA 70188 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATCAAACCACTTCATCGCCCAC 127714 || | || ||||| || |||| ||||| |||| | | ||| | || ||||| Sbjct 70189 GCCACGAGCCGCTCCGCGAAGG---CGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAG 70245 Query 127715 TGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 127773 | ||||| |||| ||| || || | |||| ||| || || || || | || | | | Sbjct 70246 TCCGCCTTCTTCTTGATGCAAGGAATCGTCTCGATGGCGTCGAAAAGGTGCTCGCGCTGC 70305 Query 127774 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT-TT 127832 | ||||| ||||||||| | || ||||| || ||||| || ||||| | | Sbjct 70306 T-TGGGATCCTTGATGTACGTGTCGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTC 70364 Query 127833 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAA 127892 ||| || | ||| | ||||||| |||| || ||| ||| ||||||| || | Sbjct 70365 CATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCCTCGGCGGCCTGGACCTCATTGG-AG 70422 Query 127893 AATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGA 127949 || | | || | ||||| || || || || || |||| || || || || | Sbjct 70423 AACCG--CTCGACAAGGTTCTCGTTCACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGCA 70480 Query 127950 TATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCT 128006 | | ||||| | | |||| ||||| | || | ||||| |||| ||| |||| Sbjct 70481 CGTGCGAGATGAAATGACGCTCATCGTCGTTGAGGCGGTTGTTCCAATCGTGGAGGTCCT 70540 Query 128007 TTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | || || || | |||||| |||||||| Sbjct 70541 TGGAAAGGTCCATCTCCTCGGCAGTCCA 70568 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||| ||| ||| || || || ||||| || || Sbjct 72643 GCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCC 72584 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||||||||||||| ||||||||| || || || || |||||||| | Sbjct 72583 GGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACG 72524 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGT-ATCAA 127697 ||||| || ||| || || | || | ||| ||||| | | || | || |||| Sbjct 72523 CCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAA--CACTGAACGCTCGTCCTCAA 72466 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || |||||| | ||||| || |||||| |||| ||| | ||| || || | Sbjct 72465 TCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGCGTCGA 72406 Query 127758 AGAG 127761 | || Sbjct 72405 ACAG 72402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613433211031680