Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq38 150 3e-31 >seq38 Length=96116 Score = 150 bits (166), Expect = 3e-31 Identities = 372/559 (67%), Gaps = 4/559 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || | |||||| |||||| ||||| |||||||| || ||||| | ||| ||||| Sbjct 70039 AAAAGCAAGCACGCGAAGTCGGTGTGCATGCCCTCGTCACGCGAGATAAGCTCATTGGAG 70098 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || ||||| | || ||| |||||||| || |||| ||||| | ||| Sbjct 70099 AACGTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAACCA 70158 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| |||||||| ||||| || |||||||||| ||| | || | || | Sbjct 70159 GAGAAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCGAAGGCGGACTCC 70218 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||||| | |||| ||||| || |||||||| |||||| || || |||| Sbjct 70219 TTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGAATCGTCTCG 70278 Query 160154 ACGGCGTTAAACAATCTG-TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTT 160212 | ||||| || || || || ||| ||| ||||||||| || | || ||| Sbjct 70279 ATGGCGTCGAA-AAGGTGCTCGCGCTGCTTGGGATCCTTGATGTACGTGTCGATGAGCAG 70337 Query 160213 CGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC 160272 |||||| | || | ||| | || || || ||||| ||| |||||| | || Sbjct 70338 CGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGC 70397 Query 160273 CTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 ||| ||| ||||| | | ||||| | | || || | || || | ||||| Sbjct 70398 CTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCACGATGCCGTC 70457 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCT 160392 | ||| || ||||| || | |||||| ||||||||||| | ||| || | |||||| | Sbjct 70458 CGAGGCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGTCGTTGAGGCG 70517 Query 160393 CTT-TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAG 160451 || |||| | ||| | ||| | || | || | ||| || || |||| | || Sbjct 70518 GTTGTTCCAATCGTG-GAGGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCCAGAATGAAG 70576 Query 160452 CCTGAGCAGTTTTGTACAT 160470 ||| ||| | |||||||| Sbjct 70577 CCTCAGCCTTCTTGTACAT 70595 Score = 127 bits (140), Expect = 3e-24 Identities = 320/482 (66%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||| |||||||||||| ||||| |||||||| || ||| | |||||| || Sbjct 72655 AAGAGGAGACACGCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAG 72596 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | |||||||| | ||| ||| || ||||| |||||||| || || | ||| Sbjct 72595 AACGTCAACCCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCG 72536 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA-AGAG-GCGT 160091 || || | ||||| || |||||||| || || |||||||| |||| | | || Sbjct 72535 GAGAAGAACACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACGC 72476 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151 | ||| | |||| | ||||| || |||||||| ||| ||||| ||| | Sbjct 72475 T--CGTCCTCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGT 72418 Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCA----CATCCTTGATCAGAGTAGCAATC 160207 ||| ||||| |||| | || | |||| |||||||| || | || Sbjct 72417 CGATGGCGTCGAACA----GGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATG 72362 Query 160208 AGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATAT 160267 ||| ||||||| | || | ||||||||| ||||| ||||| ||| || || | Sbjct 72361 AGCAGCGAGTACGTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCATAAAAGCAG 72302 Query 160268 GTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 |||||| ||| ||||| | | ||||| | | ||||| | || || | Sbjct 72301 CGCGCCTCGGCGGCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATG 72242 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTG 160387 ||||| | ||| || |||||||| | ||||| |||||||| || | ||||| | |||| Sbjct 72241 CCGTCCGAGGCGGCGAAGAAAGCAAGCACGTAGGAGATGAAGTGGCGCTCGTTTGCGTTG 72182 Query 160388 AG 160389 || Sbjct 72181 AG 72180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795059304282880