Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1153 149 7e-31 seq7597 143 3e-29 seq2399 91.5 2e-13 >seq1153 Length=45894 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || |||||||||||||||||||| Sbjct 1806 CTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1865 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| ||| | | |||||||||| ||||||| ||| | | Sbjct 1866 GATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1925 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || || | |||||||| ||||| ||||| || ||||| Sbjct 1926 GTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAAC 1985 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1986 GAAGATTTGCAT 1997 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||||| | ||||| | || || ||||||||||| Sbjct 2317 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCA 2376 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||| ||||||||||||| ||| | || |||||||||| |||||| ||| Sbjct 2377 GCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 2436 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | ||||||| || || || || | |||||||| || ||||||| ||| Sbjct 2437 A-CGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGT 2495 Query 46576 TTTAACAAAGATTTGCAT 46593 || |||||||| ||||| Sbjct 2496 CTTGACAAAGATCTGCAT 2513 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| |||| ||||| |||||||| || || Sbjct 2034 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAA 2093 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||| ||| |||||| ||||| ||| Sbjct 2094 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 2152 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || |||||| || |||| ||||| || || ||||| || || || | Sbjct 2153 TGTCGATTGTATCCGACGATTCAACCTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGA 2212 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 2213 CGAAGATTTGCAT 2225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || || || ||||| || || || | || || || |||||||| Sbjct 2596 GTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCA 2655 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | ||||||||||| | || | | |||||||||| |||||| ||| Sbjct 2656 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 2715 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||| ||| || || || | |||||||| ||||| |||| || Sbjct 2716 ACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 2775 Query 46577 TTAACAAAGATTTGCAT 46593 || |||||||| ||||| Sbjct 2776 TTGACAAAGATCTGCAT 2792 >seq7597 Length=53330 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 ||||| || | | ||||| || ||||| | || |||||| ||||| ||||||||| Sbjct 52297 TTGCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 52238 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || || ||| |||| || | |||||| || ||||| || | ||||||||| || | Sbjct 52237 GAGAGCGTACGCCCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGA 52178 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTC 46542 || | || |||||||||| ||||||| ||||| ||| | | | ||||||| || || Sbjct 52177 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCGGAAGACTC 52119 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||| ||||| || ||||| || || || |||||||| ||||| Sbjct 52118 GACCTCCAACGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCAT 52068 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| | || ||| | || || ||||||||||| ||||| Sbjct 51750 CTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAAGCTGCTTGCCAGCGAA 51691 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||||||||| || | || | || |||||||||| |||||| ||| | ||| Sbjct 51690 GATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTTA-CGT 51632 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| ||||| || || | ||||| || ||||| || |||||||| | Sbjct 51631 TGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTAAGCGTTTTCA 51572 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 51571 CGAAGATCTGCAT 51559 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| |||||||| || || ||||| |||| || Sbjct 51539 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCGTCCTCC 51480 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| || | || |||||||||| || | | |||||||||| Sbjct 51479 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 51420 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | | | ||||| ||| || || || | ||||| || || Sbjct 51419 ATCTTCGCCTTGA-CGTTGTCAATGGTGTCTGACGACTCAACCTCAAGGGTGATCGTCTT 51361 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || || ||||| Sbjct 51360 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || | || || |||| || |||||||| || ||||| Sbjct 52031 CTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAA 51972 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || ||||||||| ||||||| ||| | | Sbjct 51971 GATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTT 51912 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||| || || || | ||||||||| ||||| |||| ||| || || Sbjct 51911 ATCGATGGTATCCGACGACTCGACCTCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCAC 51852 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 51851 GAAGATTTGCAT 51840 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || || ||||| |||| |||||||||||||| || || Sbjct 51294 CTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAA 51235 Query 46462 TATCAAGCGCTGCTGGTC 46479 |||| |||||||||||| Sbjct 51234 GATCAGGCGCTGCTGGTC 51217 >seq2399 Length=624 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| |||||||||||||| ||||| Sbjct 407 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 348 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 347 GATCAGGCGCTGCTGGTCGG 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565170232248960