Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq142 230 3e-55 seq7158 136 5e-27 seq9443 132 6e-26 seq5488 86.0 8e-12 >seq142 Length=23430 Score = 230 bits (254), Expect = 3e-55 Identities = 298/412 (72%), Gaps = 0/412 (0%) Strand=Plus/Minus Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 ||| | ||||| | || || || ||||| | |||||| || ||||| ||| Sbjct 7026 ATACCCTTCTTGTACTTCCGCTTGAACTCATTGACGAAGTGGTTAACGAGTCGGTTGTCG 6967 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || |||||||| | ||| ||||| || ||||| || ||||| || ||||| || | Sbjct 6966 AAGTCCTCACCACCAAGGTGGGTATCACCAGCGGTGGCCTTGACCTCGAAGATGCCCTCC 6907 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | ||| ||||| || |||||||| || ||||| |||||||| ||||| Sbjct 6906 TCGATGGTCAGGAGCGAGACATCGAAGGTACCACCGCCGAGGTCGAAAATGAGGACGTTG 6847 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 ||| | | ||||| ||||||||||| ||||| || || ||||| || || ||| Sbjct 6846 CGCTCGCCCTGAGCCTTCTTGTCGAGACCGTAGGCGATGGCAGCGGCCGTGGGCTCGTTA 6787 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || ||||| ||| | || || || || || ||||||| || |||||||| |||||| Sbjct 6786 ATGATACGGAGAACCTGGAGACCGGCGATGGTACCCGCATCCTTTGTCGCTTGACGTTGC 6727 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 || ||||| |||||||| ||||| || | || || ||||| | |||||| || Sbjct 6726 GAGTCGTTGAAGTAGGCGGGGACGGTGATAACGGCAGAGGTGACAGTGCCACCGAGGTAG 6667 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || || ||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 6666 GACTCGGCGATCTCCTTCATCTTCGTGAGCACCATCGAGGAAATCTCCTCAG 6615 Score = 123 bits (136), Expect = 3e-23 Identities = 141/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | ||||| |||||||| || || || || ||||| | ||||||||| || Sbjct 6443 AACTTGCGACCGATGAGACGCTTCGCGTCGAAGACGGTGTTGTGGGGGTTCATCGCGACC 6384 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| ||||| || ||||| | || || | | | || ||||||||||| || Sbjct 6383 TGGTTCTTGGCCGCATCACCGATCAACCGCTCGGTGT---CGGTGAACGCGACGTATGAG 6327 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || ||||| || || || |||||||| || || || || ||||| || || ||||| || Sbjct 6326 GGCGTCGTGCGGTTACCCTGGTCGTTGGCGATGATCTCGACGCGATCATTCTGCCATACA 6267 Query 8108 CCGACGCAC 8116 ||||||||| Sbjct 6266 CCGACGCAC 6258 >seq7158 Length=14568 Score = 136 bits (150), Expect = 5e-27 Identities = 192/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || ||||| ||||| | |||| ||| Sbjct 7551 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTCGCCTTGACCGCGAAGACACCA 7610 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | | || ||||| || ||||| || || ||||| || ||||| ||| Sbjct 7611 CCGGTGATGTTGAGGAGAGAGACATCGAAGGTACCTCCGCCAAGGTCGAAGATGAGAACG 7670 Query 7577 TTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | || || ||| | ||||||||||||||||| || || || || || | Sbjct 7671 TTCTTCTC--CGCACTTGACTGGCGGTCGAGACCGTACGCGATGGCAGCTGCGGTAGGCT 7728 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || |||||||| | |||||||| || | | ||||| || ||||| | | Sbjct 7729 CGTTGATGATACGAAGGACCTCGAGGCCAGCGATGGAACCAGCATCCTTGGTCGCGAGAC 7788 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | ||||||||||| ||||| || || || Sbjct 7789 GCTGCGAATCGTTGAAGTACGCAGGAAC 7816 >seq9443 Length=25939 Score = 132 bits (146), Expect = 6e-26 Identities = 242/354 (68%), Gaps = 3/354 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || |||||||| | ||| ||||| || ||||| || ||| || || | ||| Sbjct 13391 ATCAAAGTCCTCACCACCAAGGTGGGTATCACCAGCGGTGGCCAAGACCTCGAAAACACC 13332 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | || || ||||| || |||||||| || || || | | || | Sbjct 13331 GTCGTCGATAGAGAGCAGGGAGACATCGAAGGTACCACCGCCGAGATCGTACACGATGAT 13272 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || || | | || ||| ||||||||||| ||||| |||||||| || || || Sbjct 13271 CTGCGACTCTCCACCCTT---CTTGTCGAGACCGTAGGCGATGGCCGCCGCGGTGGGCTC 13215 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || | || || ||||| || | ||||| || || || || || Sbjct 13214 GTTGATGATACGGAGGACCTGGAGACCGGCAATGGTACCGGCATCCTTGGTGGCCTGACG 13155 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | |||||| |||||||| ||||| || || || |||| ||||| |||||| Sbjct 13154 CTGAGCATCGTTGAAGTAGGCAGGGACGGTAACAACAGCGTGAGTGACGGAGCGACCGAG 13095 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || ||| | || ||||| ||| |||||||| | || ||||| || Sbjct 13094 GTAAGACTCGGCGGTCTCCTTCATCTTGCCCAGAACCATGGCAGAGATCTCCTC 13041 >seq5488 Length=3555 Score = 86.0 bits (94), Expect = 8e-12 Identities = 203/307 (66%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 22444 ttttATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || ||||| || || || ||||| ||||| || || ||| || || || | || Sbjct 1808 TTCTACCAGGCGTCGACGTCTGAGCTGTACGGCAAGGTCGTTGAGACGCCGCAGAGCGAG 1867 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 | || || || || ||||| || ||||| || || || || | || | ||| Sbjct 1868 ACGACGCCATTCTATCCGCGCTCCCCATACGGTGTCGCGAAGCTATACGGCTTCTGGATC 1927 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 || || ||||| | || | ||||| |||| ||| |||||||| || | ||||||||| Sbjct 1928 ACCGTCAATTACCGCGAGGCGTACGGCATGTATGCGTGCAATGGCATCCTCTTCAACCAC 1987 Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683 || || ||| | || ||| | ||||| || || || || | | | | || || Sbjct 1988 GAGTCGCCGCGCCGTGGTCGGACGTTCGTCACCCGCAAGATTTCCCGTGCGGCTGCGGAT 2047 Query 22684 ATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGG 22743 ||| | || || || || | ||||| |||||||| || ||||| || || ||| Sbjct 2048 ATCTTTCTCGGCAAGCAGTCTTGCCTCTACCTCGGTAACCTTGACGCGAAGCGTGACTGG 2107 Query 22744 GGTCATG 22750 || |||| Sbjct 2108 GGACATG 2114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635056202984320