Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq38 161 1e-34 >seq38 Length=96116 Score = 161 bits (178), Expect = 1e-34 Identities = 212/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 102032 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGA---AGCA 102088 |||||||||| ||||| |||| ||| || |||||| | || || |||| Sbjct 70350 GGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATC---CCAAGCAGCGCGAGCA 70294 Query 102089 GCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAA 102148 || || || |||||| | || |||| || || | ||||| ||||| |||||| || | Sbjct 70293 CCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGACTGGGCTTTGCA 70234 Query 102149 GTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 102205 ||| | | |||| |||| || |||| || ||||| ||| | || || ||| ||| Sbjct 70233 CTGGATCTCTGACAAGGAGTC-CG--CCTTCGCGGAGCGGCTCGTGGCTTTCGCGGCTGT 70177 Query 102206 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 102265 |||||||||||||||||||||||||| | | || | |||||||||||||| || || Sbjct 70176 GGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCT 70117 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 70116 GATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGG 70069 Score = 105 bits (116), Expect = 8e-18 Identities = 198/289 (69%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| |||||| ||||| ||||| | || || || |||||| | Sbjct 72360 CTCATCGACACGTATATCAAGGACCCCGCTGAACGCGCGTTCCTGTTCGACGCCATCGAC 72419 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 || | || ||||| | ||||| ||||| ||||| || ||| |||| || | Sbjct 72420 ACCATCCCGTGTATCCGTAAGAAGGCGGACTGGGCGTTGCGCTGGATTGAGGACGA---- 72475 Query 102167 GCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 |||||| ||||| ||| | || ||||||||||| || ||||| | |||||||| Sbjct 72476 GCGTTCAGTGTTTGCGGAGAGGCTGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTC 72535 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || ||| ||| |||| ||||| |||||||| || | ||||| || | || Sbjct 72536 CGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGTT 72595 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| |||||||||||| || |||||||| | ||| || |||||| Sbjct 72596 CTCTAACGAGCTTATCAGCCGAGACGAGGGTATGCACACCGACTTTGCG 72644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620667538466560