Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7597 140 7e-28 seq1153 129 1e-24 >seq7597 Length=53330 Score = 140 bits (154), Expect = 7e-28 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCG 194991 ||||||| ||||||||||| || || || |||||||||| |||| || | |||||| || Sbjct 51766 CAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAG-GTCCGCCCATCCTCA 51708 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || || || || |||||||| || ||||| ||| Sbjct 51707 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 51648 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || ||||| || || ||| || ||||| || | ||||| Sbjct 51647 ATCTTCGCCTTTACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTG 51588 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 51587 CCGGTAAGCGTTTTCACGAAGATCTGCAT 51559 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| || || || ||||| || | || || | || || || Sbjct 51539 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCGTCCTCC 51480 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 51479 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 51420 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || || || |||||||| | |||||| Sbjct 51419 ATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAACCTCAAGGGTGATCGTCTTC 51360 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 51359 CCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| || ||||| || || || |||||||| | |||| || | || || || |||| Sbjct 52043 GTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAG-GTACGGCCGTCCTCCAGCT 51985 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || ||||||||||| || || ||||| ||||| ||||| || |||||||| || | Sbjct 51984 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCT 51925 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| ||||| || ||||| ||||| || || ||||| || | ||||| || | Sbjct 51924 TCGCCTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGCGTGATGGTCTTGCCAG 51865 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| | |||||| Sbjct 51864 TCAACGTCTTCACGAAGATTTGCAT 51840 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| |||||||| || || ||||| || | || || | || |||||| Sbjct 51311 ACTAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCG 51252 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||| || || ||||| || || || ||||| ||||| |||| Sbjct 51251 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGC 51206 >seq1153 Length=45894 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || ||||| || | ||| || | ||||| ||| Sbjct 1789 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCCTCG 1848 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || || || ||||| || Sbjct 1849 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 1908 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||||||||| || || || || || | ||||| Sbjct 1909 ATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTG 1968 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 1969 CCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| |||||| ||| || ||||| || ||||||| || || | ||||| || || Sbjct 2587 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 2646 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || || || ||||| ||||| || || || ||||| || || Sbjct 2647 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATC 2706 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||| || || || ||||||||||| || || || ||||| | ||||| || Sbjct 2707 TTAGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 2766 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || || | ||||| Sbjct 2767 GTCAAAGTCTTGACAAAGATCTGCAT 2792 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||||||||| ||||| ||||| || | |||||| | || || || Sbjct 2812 ACGAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCA 2871 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 |||||||| || ||||||||||| || || ||||| |||||||| Sbjct 2872 AGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAAT 2915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109344451432016