Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2039 111 1e-19 >seq2039 Length=45597 Score = 111 bits (122), Expect = 1e-19 Identities = 205/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 ||| ||||| |||| | ||||||||| | ||| || |||| | |||| ||| | Sbjct 8572 GGGATTCCACGCGCTGAGGATGATGCGACGGTCGGTGGGATTGTGCTTGATTTTGTCGAT 8513 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACT 30163 | | ||| ||||||||||| ||| | || | || || | | || || ||| | Sbjct 8512 GCACTCTTGGAGCTGATCCACGCCCTTGCCGGTATAATCGGTGTCGCAA-TCGACGTATT 8454 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 || || || || ||||| |||||||| ||||| || || ||||| |||||| || | Sbjct 8453 GCGCGCCAAAGTGTCTCCATTGGAACCCATACACGGGCCCTAGGTCGCCCTCTCGCCGAT 8394 Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30283 | | || || | ||| || | || || | || ||||| | ||||||||||| | || Sbjct 8393 GTCCTAAACCACGCTTCTCGAGGAACTCCTTCGAGCCGTTACCATCCCAGATCTTGATCC 8334 Query 30284 CCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 ||||| |||| |||| |||||||| ||| | || | | ||||| | |||||||| Sbjct 8333 CCTTCGCGGACAGCTGTTTGGAGTCCGTGCATCCGCGTATAAACCATAAGAGCTCCTC 8276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408569552699504