Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7597 105 5e-18 seq1153 91.5 1e-13 >seq7597 Length=53330 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || |||||| | || |||| || | ||| || ||| ||| || || || ||||| || Sbjct 52298 GTTGCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 52239 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 || || | || |||| ||||||||||| || || || || || ||||| ||||||| Sbjct 52238 GGAGAGCGTACGCCCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGG 52179 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | |||||||||||| ||||| || || | | | || || | ||| Sbjct 52178 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTC 52119 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| |||||| || |||||||| | || || ||||| |||||||| Sbjct 52118 GACCTCCAACGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCAT 52068 >seq1153 Length=45894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| || ||||| || || | ||| | || |||| ||| Sbjct 2590 TGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGC 2649 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| || || | || | ||||||||||| ||||| Sbjct 2650 TTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTA 2709 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || |||| ||| ||||| | || || || || || ||| Sbjct 2710 GCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 2769 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| |||||||| Sbjct 2770 AAAGTCTTGACAAAGATCTGCAT 2792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 48557 CACCAAA-TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| || || |||||||| || || || ||||| || || | | ||| | || | Sbjct 2303 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCT 2362 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 | | |||||| || || || ||||| ||||| || || | || | |||||||||||| Sbjct 2363 CAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 2422 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 |||||| || || | | | || || | ||| ||||| | || || || | Sbjct 2423 GAATCTTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCT 2482 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||||||| || || ||||| |||||||| Sbjct 2483 TCCCCGTCAACGTCTTGACAAAGATCTGCAT 2513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380892807452304