Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq38 205 2e-47 seq5619 105 1e-17 >seq38 Length=96116 Score = 205 bits (226), Expect = 2e-47 Identities = 392/572 (69%), Gaps = 17/572 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| ||||||||||||| || ||| || |||||||| ||| ||||| | || Sbjct 72090 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 72149 Query 25537 GCCAAGGAC---ATGGACGGCTGGTAC--GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||| ||| |||||| | ||| |||| | |||| ||||| || || || Sbjct 72150 GCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCAAA--CGAGCGCCACTTCATCT 72207 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||||| | || ||||| || ||||| || || || |||||||||||||| |||| Sbjct 72208 CCTACGTGCTTGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAGC 72267 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | ||| | | || || ||| || ||||| || || || || |||||||| | Sbjct 72268 GGTTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTATGGCTTCCAGATCATGA 72327 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| ||||||||||| ||| ||| | ||| || || ||||| || | ||| Sbjct 72328 TCGAGAATGTGCACTCGGAGACGTA---CTCGCTGCTCATCGACACGTATATCAAGGACC 72384 Query 25769 TCGCCGA--GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 ||| || | | | || ||||| | |||||||| ||| || | ||| | ||| Sbjct 72385 CCGCTGAACGCGCGTTC--CTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAA 72442 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 |||| ||||| || ||||| | | || | | ||||| ||| ||||||| Sbjct 72443 GGCGGACTGGGCGTTGCGCTGGATTGAGGACGAGCGTTCAGTGTTTGCGGAGAGGCTGGT 72502 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 || ||||| || || |||||| | || ||| ||| ||||| || ||||| |||||||| Sbjct 72503 CGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCT 72562 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || |||| ||||| ||| || || || |||||||| |||||| | ||||| Sbjct 72563 GAAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGA 72622 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 |||| | |||| || ||||| || || |||| Sbjct 72623 GGGTATGCACACCGACTTTGCGTGTCTCCTCT 72654 Score = 185 bits (204), Expect = 2e-41 Identities = 385/567 (68%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||| ||||| ||||| || || Sbjct 70604 ATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTT 70545 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCAT--TTTC-TCAAG 25593 |||||||| | ||| ||| || | ||| ||||| ||| | |||| || | Sbjct 70544 TCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCG 70485 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||||||||||| || |||| | Sbjct 70484 CACGTGCTCGCCTTCTTCGCTGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGG 70425 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| ||| || || ||| || ||||| || |||||||| |||||||| || Sbjct 70424 TTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATG 70365 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| || | ||| || || |||||||| | || | Sbjct 70364 GAGAACATCCACTCGGAGACATACTC---GCTGCTCATCGACACGTACATCAAGGATCCC 70308 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 || | || | || || | ||||||||| || || ||||||||| ||||||| Sbjct 70307 AAGCAGCGCGAGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCG 70248 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || | |||||| | | || | | | | || | |||||||| || || Sbjct 70247 GACTGGGCTTTGCACTGGATCT-CTGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGC 70189 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || || ||||||||||| ||||| ||| ||||| ||||| |||||||||||||||| Sbjct 70188 TTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAA 70129 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||||| || || ||||| ||||| ||| | |||||||| Sbjct 70128 GAAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGG 70069 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036 | |||| || || || ||| |||| Sbjct 70068 CATGCACACCGACTTCGCGTGCTTGCT 70042 >seq5619 Length=11060 Score = 105 bits (116), Expect = 1e-17 Identities = 170/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || || ||||||||||| || |||||| | |||||| || |||||||| || Sbjct 2150 GCGGCATGGTAGATGGTTTCGAAGATCTGCAGGTTGAGCCTGCGTGCCTCGGGCGAGTCA 2209 Query 221483 AAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGG 221541 || ||||| ||||| | |||| | |||||||||| ||||| || ||||| |||||||| Sbjct 2210 AACGGCATGCGCAGGGCCATGAACG-CGTCGGCCAGACCCTGCACGCCGATTCCGATGGG 2268 Query 221542 CCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | ||| | | |||||||| || | ||| || || | ||||| |||||||||||| | Sbjct 2269 GCGGTGGCGCATGTTGGAA-CGACGCGCCTCCGGAATAGGATAGTGGTTGACGTCGATGA 2327 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAAC 221659 ||| ||||| | | || || || ||| ||| || ||||||| |||| || Sbjct 2328 TGCGGTTCAGGTTGAACGCGACCACCTTGGTCACGTCGTGCAACTTCTGGAAATTGTAC 2386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928732781317120