Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5619 143 2e-29 seq7597 129 5e-25 seq1153 102 7e-17 >seq5619 Length=11060 Score = 143 bits (158), Expect = 2e-29 Identities = 309/459 (67%), Gaps = 6/459 (1%) Strand=Plus/Plus Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | ||||| || |||||||||| || || |||||| ||| | ||||| ||||| Sbjct 1904 GTGTAGGGCTCGAAGCATTCGTTGTTGCCGAGGATCTGACTCGTCGAGGCGGTAGGCATC 1963 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGAC 138672 || || | || || ||||| | ||||| | || | |||| | || | Sbjct 1964 GGAGCGACAAGCAGGGAGTTCCGAAGACCGTACTGTGCGACCTTTGCCTTCAAGCTCGCC 2023 Query 138673 CAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTT 138732 |||||||| | |||| | || | | ||| | || || || | | | ||| Sbjct 2024 CAGTCCCATAGATCGGTGGGAGTGATCCCCCATAGGTCATATTGGAGCTTGCCCTCGGAC 2083 Query 138733 GCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCC 138792 || || ||||| | ||||| ||||| |||||||| | ||||| ||| |||||| Sbjct 2084 GCTGGGCTGCCCTGGTACGTCTCGTAAGGGCCAAACTCCTTCGCCATCTCACAGCTCGCT 2143 Query 138793 TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCG 138852 || | || ||| ||| || |||||| |||||| | |||||| || ||||||| Sbjct 2144 TCAACAGCGGCATGGTAGATGGTTTCGAAGATCTGCAGGTTGAGCCTGCGTGCCTCGGGC 2203 Query 138853 CTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCG 138912 || |||||||||| || | |||||||||||||||| || |||||||| | |||| Sbjct 2204 GAGTCAAACGGCATGCGCAGGGCCATGAACGCGTCGGCCAGACCCTGCACGCCGATTCCG 2263 Query 138913 ACAGGGCGATGGCGCAGATTTG-ACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACA 138969 | ||||| ||||||| || | ||| ||| || || |||||||| | ||| || Sbjct 2264 ATGGGGCGGTGGCGCATGTTGGAACG---ACGCGCCTCCGGAATAGGATAGTGGTTGACG 2320 Query 138970 TCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTC 139008 |||||||| ||| | || | |||||||||| ||| Sbjct 2321 TCGATGATGCGGTTCAGGTTGAACGCGACCACCTTGGTC 2359 >seq7597 Length=53330 Score = 129 bits (142), Expect = 5e-25 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||||| ||||| || ||||| || || || || ||| || || Sbjct 51559 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCC 51618 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| || ||||| || || || || || ||||| Sbjct 51619 GATACCATCGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 51678 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| |||||| | | | | |||| ||||| ||| Sbjct 51679 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGGACCTTGTCCGATTACAAC 51738 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 || || ||||| || || || || ||||||| Sbjct 51739 ATCCAGAAGGAGTCCACTCTCCACCTTGGTG 51769 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||| | || || || || || ||||| || || || | | Sbjct 51840 ATGCAAATCTTCGTGAAGACGTTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCG 51899 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || |||||||| || Sbjct 51900 GATACCATCGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 51959 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||||||||| | | | |||| ||||| ||| Sbjct 51960 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGTACCTTGTCGGATTACAAC 52019 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || |||||||| | || ||||| || ||| Sbjct 52020 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGCTTGCGTGGTGGC 52067 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || |||||| | || || || | || Sbjct 52068 ATGCAGATCTTTGTCAAGACCCTTACGGGAAAGACCATTACGTTGGAGGTCGAGTCTTCC 52127 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 52128 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAG 52187 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| ||| ||||||| | | | | || || || ||| Sbjct 52188 CAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGGCGTACGCTCTCCGACTACAAC 52247 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 || || ||||| || || || || | || |||| | || || ||| ||||||| Sbjct 52248 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTCCGTGGCGGC--AACTGAG 52302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || || || || | | Sbjct 51331 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTTGAGTCGTCA 51390 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| || Sbjct 51391 GACACCATTGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 51450 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| || ||||||||||| | | | | ||||| || ||| Sbjct 51451 CAACGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCAGACTACAAC 51510 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 51511 ATCCAGAAGGAGTCTACCCTCCATCTTG 51538 >seq1153 Length=45894 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || ||||| || || | | Sbjct 2792 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 2733 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 2732 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 2673 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || || ||||||||| | | | | || ||||||||| Sbjct 2672 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGTCGTACCCTCTCCGATTATAAC 2613 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 2612 ATTCAGAAGGA 2602 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || || || ||||| || || | || Sbjct 2513 ATGCAGATCTTTGTCAAGACGTTGACGGGGAAGACCATCACTCTCGAGGTCGAGTCTTCC 2454 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || ||||| || Sbjct 2453 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 2394 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| |||||| | | | |||| || || ||| Sbjct 2393 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAAC 2334 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 || || ||||| || || || ||||||| Sbjct 2333 ATCCAGAAGGAGAGCACCCTTCACCTTGGTG 2303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449843342349440