Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq38 181 2e-39 seq5619 113 7e-19 >seq38 Length=96116 Score = 181 bits (200), Expect = 2e-39 Identities = 227/303 (75%), Gaps = 25/303 (8%) Strand=Plus/Plus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG---CACAGAAACTGCCCGA 794432 ||| |||||||| |||||||||||||||||||| ||||||| || || ||| | || Sbjct 70104 GAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAAC---CAGA 70160 Query 794433 GAAAAAGATGCCCTCGACGGCGGC-AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC 794491 ||| ||||| ||||| || || || |||||| ||||||||||| || || | | | Sbjct 70161 GAAGAAGATACCCTCCACAGCCGCGAAAGCC-ACGAGCCGCTCCGCGAAGGCGGAC---- 70215 Query 794492 CCTCTTTGTT---GATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCG 794548 || |||| |||||| | || ||||| || ||||| ||| | | | || | || Sbjct 70216 --TCCTTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGAATCG 70273 Query 794549 TGTCGATGGCG-CGAAAGAGGTGGTC---CTTCTCGACCGGGTCCTTGACGTAGGTGTCG 794604 | ||||||||| ||||| ||||| || || || | || ||||||| ||| |||||| Sbjct 70274 TCTCGATGGCGTCGAAA-AGGTGCTCGCGCTGCTTG---GGATCCTTGATGTACGTGTCG 70329 Query 794605 ATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||||| |||||||| ||||| ||||||||||| || || |||||||||||| || ||| Sbjct 70330 ATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 70389 Query 794665 CAG 794667 ||| Sbjct 70390 CAG 70392 Score = 172 bits (190), Expect = 9e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 793896 CCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAG 793955 || ||| | || |||||| ||||| |||||| |||||||||||||||| ||||||| Sbjct 73000 CCGGCCATTGCGTACTCGGAGACGCGTTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAG 72941 Query 793956 ATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGAC 794015 || | ||||| | ||||||||| | | |||||||||||||| |||||||| Sbjct 72940 ATGAGGTCCATGAAGTCGAACGGGTTCGTGGCGCGGTAGTGCTTCTCGTTCCCGAGCGCG 72881 Query 794016 GCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCG 794075 | ||||| ||||| || ||||| || || ||||||||||||||| |||||||||||||| Sbjct 72880 ACGAGCAGACGGTCCGCTACGAACTCGATATACTGGCACATGAGGTCGGCGTTCATGCCG 72821 Query 794076 ATGAGCGCCACGGGCAGCGACTC 794098 ||||||| || ||||||| ||| Sbjct 72820 ATGAGCGAGACCGGCAGCGCCTC 72798 Score = 134 bits (148), Expect = 2e-25 Identities = 204/289 (71%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || |||||||| ||||| || ||||| ||| || ||||| || Sbjct 72586 CCCGGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAAC 72527 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAA-AGTGTCCAGGCCCTCTTT 794498 | ||||||||| || ||||| |||| |||| ||| ||||| | || | ||| | Sbjct 72526 ACGCCCTCGACTGCCGCAAATGCGACCAGCCTCTCCGCAAACACTGAACG----CTCGTC 72471 Query 794499 GTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | ||||| || |||||| || ||||| || | | | || | ||||||||||| Sbjct 72470 CTCAATCCAGCGCAACGCCCAGTCCGCCTTCTTACGGATACACGGGATGGTGTCGATGGC 72411 Query 794559 GCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 794618 | || ||| | || | |||||||||| || ||||||||||| |||||||| Sbjct 72410 GTCGAACAGGAACGCGCGTTCAGCGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTA 72351 Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||| | || ||||| |||||||||||||||||||||| Sbjct 72350 CGTCTCCGAGTGCACATTCTCGATCATGATCTGGAAGCCATAAAAGCAG 72302 Score = 132 bits (146), Expect = 8e-25 Identities = 156/205 (76%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || ||||| || | ||| ||| ||| ||| |||||| ||||| |||||||||| |||| Sbjct 69697 ACACCCGCTTTCGAATAGTCGGACACCCGCTTCTCGAAGAAGTTTGTCTTGCCCTGGAGC 69756 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTC-GCACC-CGA 794010 ||||||| ||||| | ||||||||||| | ||||| |||||| | || || Sbjct 69757 GAGATCATGTCCATGAAATCGAACGGGTTGGTCACGTTGTAGTACTTCTCATCGCCGAGA 69816 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 |||||| || || || || |||||||| || ||||||||||||||||| | ||||| Sbjct 69817 GCGACG--AGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCTTCGAGTTCA 69874 Query 794071 TGCCGATGAGCGC-CACGGGCAGCG 794094 |||||||||| || || ||| |||| Sbjct 69875 TGCCGATGAGGGCACATGGG-AGCG 69898 Score = 118 bits (130), Expect = 2e-20 Identities = 156/213 (73%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| || ||| || || | |||||||| |||||||||| Sbjct 70396 GCCTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCACGATGCCG 70455 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-G 796268 || ||| ||||| |||||||| |||||| ||| || |||||||| |||||| ||| | Sbjct 70456 TCCGAGGCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGTCGTTGAGG 70515 Query 796269 CG--AGACCCA---GTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 || | ||| ||||| ||| | ||||| | ||||||||| ||||| || Sbjct 70516 CGGTTGTTCCAATCGTGGA---GGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCCAGAAT 70572 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || ||||| ||||| |||||||||| ||| ||| Sbjct 70573 GAAGCCTCAGCCTTCTTGTACATCTGCCAAATC 70605 Score = 102 bits (112), Expect = 1e-15 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | || ||||| || ||| || || | || ||||| |||||||||| Sbjct 72298 GCCTCGGCGGCCTGTACCTCGTTAGAGAACCGCTCGACGAGATTCTCGTTCACGATGCCG 72239 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| || || || |||| ||| ||||| ||||||| || ||||| Sbjct 72238 TCCGAGGCGGCGAAGAAAGCAAGCACGTAGGAGATGAAGTGGCGCTCGTTTGCGTTGAGC 72179 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || ||||| | |||| | |||||| || ||||||| ||||||| || || Sbjct 72178 TTGTAGTTCCAGTCCATGAGGTCGTTGGCGAGGTTGATCTCCTCGACGGTCCAGAACGAC 72119 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || | ||| || |||||||||| ||||||| Sbjct 72118 GCTTGGGCGTTCTTGTACATCTGCCATATC 72089 >seq5619 Length=11060 Score = 113 bits (124), Expect = 7e-19 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 || ||||||||||| || || ||||| ||| ||||||| | || || ||| || Sbjct 2150 GCGGCATGGTAGATGGTTTCGAAGATC-TGCAGGTTGAGCCTGCGTGCCTCGGGCGAGTC 2208 Query 2070111 CCACGGCAGGTCCAT---CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 |||||| | || |||| |||||||||||||| ||||||||||||| || || Sbjct 2209 AAACGGCATGCGCAGGGCCATG---AACGCGTCGGCCAGACCCTGCACGCCGATTCCGAT 2265 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||||| ||| || | || ||||| || | || |||||||||| |||||| Sbjct 2266 GGGGCGGTGGCGCATGTTGGAACGACGCGCCTCCGGAATAGGATAGTGGTTGACGTCGAT 2325 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| |||||| Sbjct 2326 GATGCGGTTCAGGTTG 2341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915220098235472