Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1153 122 2e-22 seq7597 116 7e-21 >seq1153 Length=45894 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || ||||| || | | ||| Sbjct 2011 CGGAGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGGCCG 2070 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| || ||||||||||| || | || || || ||||| || || |||||| Sbjct 2071 TCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTA 2130 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || || || || || ||||| | ||| || ||||| || ||| Sbjct 2131 TCCTGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACGATTCAACCTCCAAGGTGATC 2190 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || || ||||| Sbjct 2191 GTCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 116 bits (128), Expect = 7e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||| || ||||| || |||||||| || || | | ||| || || ||||| Sbjct 2589 GTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTG 2648 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || | || || || ||||| || || ||||| || || ||||| Sbjct 2649 CTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 2708 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || || || || | || || || | || || |||||||| || Sbjct 2709 AGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2768 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 ||| ||||| ||||| |||||||| Sbjct 2769 CAAAGTCTTGACAAAGATCTGCAT 2792 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || || || | | | ||| || || || || || ||||| ||| Sbjct 2323 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 2382 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || || || || || || || ||||| || |||||||| || || || || Sbjct 2383 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2442 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || ||||| || || || || || | ||| || ||||| || ||||||||||| ||| Sbjct 2443 TCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGTCTTGACA 2502 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 2503 AAGATCTGCAT 2513 >seq7597 Length=53330 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| || || || ||||| || || || || ||||| || || ||||| || Sbjct 52066 CCACCACGCAAGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 52007 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || || || |||||||| ||||| || | || || || ||||| Sbjct 52006 AAGGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 51947 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || || || || ||||| | || || Sbjct 51946 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACTCGACC 51887 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||||||||| || || || ||||| Sbjct 51886 TCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCAT 51840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981705831430672