Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1153 105 4e-18 seq7597 95.1 8e-15 >seq1153 Length=45894 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||||||||| || || ||||| ||||||||||| || || | || |||| ||| Sbjct 2590 TGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGC 2649 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| || | ||||||||| || | || | ||| || ||||| || || Sbjct 2650 TTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTA 2709 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | |||||| || || || || | ||||| || || || || Sbjct 2710 GCCTTC-ACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2768 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||||||||||||| Sbjct 2769 CAAAGTCTTGACAAAGATCTGCATA 2793 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || || |||||||| || || |||||||| ||||| | ||||| | || | Sbjct 2303 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCT 2362 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 | | || || || || || |||| ||||||||| || |||| | || || ||||| Sbjct 2363 CAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 2422 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| ||| |||| | | ||| | |||||| || || || || | ||||| || Sbjct 2423 GAATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTC 2481 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || ||||| || |||||||||||||| Sbjct 2482 TTCCCCGTCAACGTCTTGACAAAGATCTGCAT 2513 >seq7597 Length=53330 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || |||||| ||| || || |||||||||||||| | || || | || | Sbjct 51769 CACCAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCT 51710 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 | | || || || || || ||||| ||||||||||| | || | || || ||||| Sbjct 51709 CAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCT 51650 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| ||| | | || | ||| | ||| ||| ||||| || |||| ||||| || Sbjct 51649 GAATCTTC-GCCTTTACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTC 51591 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | |||||| || |||||||||||| Sbjct 51590 TTGCCGGTAAGCGTTTTCACGAAGATCTGCATA 51558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328665349340160