Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7597 105 2e-17 >seq7597 Length=53330 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || || || |||||| | || || ||| || || || |||| Sbjct 51574 AAAACGCTTACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCCGATACCATCGACAAC 51633 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||| || || || || ||| || || || | | |||||| Sbjct 51634 GTAAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAGCAGCGCTTGATCTTC 51693 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| |||| ||| ||||||||||| ||||||| ||||| Sbjct 51694 GCTGGCAAGCAGCTTGAGGATGGGCGGACCTTGTCCGATTACAACATCCAGAAGGAGTCC 51753 Query 206365 ACTCTTCACCTTG 206377 ||||| ||||||| Sbjct 51754 ACTCTCCACCTTG 51766 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| | || || || || ||| Sbjct 51334 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTTGAGTCGTCAGAC 51393 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || || ||| ||| Sbjct 51394 ACCATTGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAA 51453 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| |||| || ||| | || | | || |||||| || Sbjct 51454 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCAGACTACAACATC 51513 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || || ||||| Sbjct 51514 CAGAAGGAGTCTACCCTCCATCTTGT 51539 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || || || ||||| || || ||| ||| Sbjct 52071 CAGATCTTTGTCAAGACCCTTACGGGAAAGACCATTACGTTGGAGGTCGAGTCTTCCGAC 52130 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || ||||| || Sbjct 52131 ACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAG 52190 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||||||||| || || | || | |||| |||||| || Sbjct 52191 CGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGGCGTACGCTCTCCGACTACAACATC 52250 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 52251 CAGAAGGAGTCCACCCTCCATCTCGT 52276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181674709221808