Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq38 259 7e-63 seq5027 95.1 2e-13 seq5619 87.8 3e-11 >seq38 Length=96116 Score = 259 bits (286), Expect = 7e-63 Identities = 377/516 (73%), Gaps = 30/516 (6%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| ||||| || || ||||| ||||||||| | |||| Sbjct 70605 GATTTGGCAGATGTAC-AAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACC 70547 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCA 1455888 | | ||| ||||| ||| ||| | | |||||| ||||| ||||||| Sbjct 70546 TTTCCAAGGACC---TCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCA 70490 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||||| |||||||| || ||| ||| || ||||||||| ||||||||| | | Sbjct 70489 TCTCGCACGTGCTCGCCTTCTT-CGCTGCCTCGGACGGCATCGTGAACGAGAACCTTGTC 70431 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || || |||||||| | |||||||| | || ||||| ||||||||| Sbjct 70430 GAGCGGTTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATC 70371 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || || |||||||| || |||||||| ||| ||||||| Sbjct 70370 ATGATGGAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGAT 70311 Query 1456069 CCGGTCGAGAAG---GACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 || | || || || ||||| ||||| ||||||||| ||| | || | | | ||| Sbjct 70310 CC---CAAGCAGCGCGAGCACCT-TTTCGACGCCATCGAGACGATTCCTTGCATCAAGAA 70255 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||||| |||||||| || | |||||| ||||||| | || | ||| || ||| Sbjct 70254 GAAGGCGGACTGGGCTTTGCACTGGATCTCTGACAAGGA-GTCCGC----CTTCGCGGAG 70200 Query 1456182 CGGCTCGTCGGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 |||||||| |||||| || || || ||||| ||||| ||||| || || | |||| Sbjct 70199 CGGCTCGT-GGCTTTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCAT 70141 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||||| ||||||||||| Sbjct 70140 CTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCT 70105 Score = 187 bits (206), Expect = 4e-41 Identities = 346/502 (69%), Gaps = 8/502 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || || ||| | || || || ||||||| ||||||| || ||| Sbjct 72089 GATATGGCAGATGTAC-AAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACC 72147 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| | |||| | ||||| | ||| | || |||||||||| |||||| Sbjct 72148 TCGCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCAAACGAGCGCCACTTCATCT 72207 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||| || || ||| ||||||||| || ||||||||| |||||| || | || Sbjct 72208 CCTACGTGCTTGC-TTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAG 72266 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || || ||||| || | ||||| || | ||||| || ||||||||| Sbjct 72267 CGGTTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTATGGCTTCCAGATCATG 72326 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| || | ||||| || || |||||||| || |||||||| || |||||||||| Sbjct 72327 ATCGAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCCC 72386 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || | ||| || |||||||||||| | |||| | | || ||||| Sbjct 72387 GCTGAACGCGCGTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGGCG 72446 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 ||||||||| || ||||| | | || || | | ||||| ||| |||| |||| Sbjct 72447 GACTGGGCGTTGCGCTGGATTGAGGACGA--GCGTTCAGTGTTTGCGGAGAGGCTGGTCG 72504 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| || ||||||||| | || ||||| || ||| |||||| || ||||| | Sbjct 72505 CATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTGA 72564 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| || | ||||| || Sbjct 72565 AGAAGCGGGGGTTGATGCCGGG 72586 Score = 163 bits (180), Expect = 4e-34 Identities = 163/206 (79%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 ||| |||||||||| |||||||||||||||||||| | |||||||||||||| || || Sbjct 72798 GAGGCGCTGCCGGTCTCGCTCATCGGCATGAACGCCGAC-CTCATGTGCCAGTATATCGA 72856 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 || || || ||||| ||||||| |||||||| || ||||||||||||| | | Sbjct 72857 GTTC-GTAGCGGACCGTCTGCTCGTCGCGCTCGGGAACG-AGAAGCACTACCGCGCCACG 72914 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||||||| | ||||| | ||||||||| |||||||||||||||| |||||| Sbjct 72915 AACCCGTTCGACTTCATGGACCTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAA 72974 Query 1456745 CGCGT-GGCGAGTACGCCAAGGCCGG 1456769 ||||| ||||||||| | |||||| Sbjct 72975 CGCGTCTCCGAGTACGCAATGGCCGG 73000 Score = 120 bits (132), Expect = 4e-21 Identities = 126/162 (78%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || ||||||||||||||| | | |||||||||||||||||| || || ||||| || | Sbjct 69887 GCCCTCATCGGCATGAACTCGAA-GCTCATGTGCCAGTACATCGAGTTC-GTCGCTGATC 69830 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | || |||| || |||||| | |||||| ||||| | ||||||||||| | Sbjct 69829 GTCTTCTCGTCGCTCTCGGC-GATGAGAAGTACTACAACGTGACCAACCCGTTCGATTTC 69771 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||| ||||||||||| |||||||||| ||||| |||||| Sbjct 69770 ATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAG 69729 >seq5027 Length=12256 Score = 95.1 bits (104), Expect = 2e-13 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || |||||||| ||||||| ||| ||||||| |||||||| ||| ||||||||||| Sbjct 10248 GCGGACCTGGTATCGTGGGGTGCCATCGGTGCACGCACCACGGAGTCACAGGTGCACCGT 10189 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAAC 165851 ||| | | ||| |||||| | |||||| |||||||||||| Sbjct 10188 GAGCTCGTGTCTGCGCTGTCAATGCCCACCGGCTTCAAAAAC 10147 >seq5619 Length=11060 Score = 87.8 bits (96), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||| ||| || |||||| || ||||||| || || || |||||||| || | Sbjct 3343 ATGTCGGAGCGGTACTTCACCCATGCATCGCCCACCCTTTTCAACGCCGGCACTCCCAAC 3284 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || ||| || |||||||| || |||||||| ||| || |||||||||||||| Sbjct 3283 CCCCAGCTGAGTTCATGCTTTCTTGTGTGCATGAAGGACGACTCCATCGAGGGCATCTAC 3224 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065 || |||||| | || ||| | ||| ||| | |||||||| || ||| Sbjct 3223 TCGACTCTCAAGGATTGTGCGATGATCAGCAAAACCGCCGGCGGTATTGGT 3173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176880632666976