Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq38 105 8e-18 >seq38 Length=96116 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| || || || ||||| ||||| ||||| ||||| ||||| || || |||||| Sbjct 70069 CCCTCGTCACGCGAGATAAGCTCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTC 70128 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | | || || || ||||||||||||||||||||| ||| || Sbjct 70129 TTGAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAA 70188 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCATTT 122855 || | || || || ||||||| | || | ||| || | ||| | || ||||| | Sbjct 70189 GCCACGAGCCGCTCCGCGAAGGCG-GACTCCTTGTCAGAGATCCAGTGCAAAGCCCAGTC 70247 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 ||||||||||| || || || | || | |||||| || || | |||| Sbjct 70248 CGCCTTCTTCTTGATGCAAGGAATCGTCTCGATGGCGTCGAAAAGGTGCT 70297 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | |||||| |||||| ||||| || || ||||| | || Sbjct 72643 GCAAAGTCGGTGTGCATACCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCC 72584 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||||||||||| ||| |||| ||| ||| |||||||||||||| | Sbjct 72583 GGCATCAACCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACG 72524 Query 122779 CCCTCCACACACGCAAACGC 122798 ||||| || |||||| || Sbjct 72523 CCCTCGACTGCCGCAAATGC 72504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627956259340800