Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq38 161 1e-34 seq5619 86.0 7e-12 seq5488 84.2 3e-11 >seq38 Length=96116 Score = 161 bits (178), Expect = 1e-34 Identities = 212/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGA---AGCA 94712 |||||||||| ||||| |||| ||| || |||||| | || || |||| Sbjct 70350 GGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATC---CCAAGCAGCGCGAGCA 70294 Query 94713 GCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAA 94772 || || || |||||| | || |||| || || | ||||| ||||| |||||| || | Sbjct 70293 CCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGACTGGGCTTTGCA 70234 Query 94773 GTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 94829 ||| | | |||| |||| || |||| || ||||| ||| | || || ||| ||| Sbjct 70233 CTGGATCTCTGACAAGGAGTC-CG--CCTTCGCGGAGCGGCTCGTGGCTTTCGCGGCTGT 70177 Query 94830 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 94889 |||||||||||||||||||||||||| | | || | |||||||||||||| || || Sbjct 70176 GGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCT 70117 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 70116 GATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGG 70069 Score = 111 bits (122), Expect = 2e-19 Identities = 250/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Plus Query 94591 GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT-GAAATGGT 94649 ||||| || || | || ||| | | ||| |||| | ||| |||| || || | || Sbjct 72279 GAGGTACAGGCCGCCGAGGCGCGCTGCTTTTATGGCTTCCAGA-TCATGATCGAGAATGT 72337 Query 94650 GCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAA 94709 ||| |||||| ||| ||||| |||| |||||| ||||| ||||| Sbjct 72338 GCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCCCGCTGAACGCGC 72397 Query 94710 GCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTAT 94769 | || || || |||||| | || | |||||||| | ||||| ||||| ||||| | Sbjct 72398 GTTCCTGTTCGACGCCATCGACACCATCCCGTGTATCCGTAAGAAGGCGGACTGGGCGTT 72457 Query 94770 GAAGTGGTTTGAT-ACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGT 94825 | ||| |||| || | |||||| ||||| ||| | || ||||||||||| Sbjct 72458 GCGCTGGATTGAGGACGA----GCGTTCAGTGTTTGCGGAGAGGCTGGTCGCATTTGCGG 72513 Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885 || ||||| | |||||||| || || ||| ||| |||| ||||| |||||||| | Sbjct 72514 CAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGCGGG 72573 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 | | ||||| || | ||||| |||||||||||| || |||||||| | ||| Sbjct 72574 GGTTGATGCCGGGGTTGACGTTCTCTAACGAGCTTATCAGCCGAGACGAGGGTATGCACA 72633 Query 94946 AAGAGTTTGCG 94956 || |||||| Sbjct 72634 CCGACTTTGCG 72644 >seq5619 Length=11060 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/226 (69%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || ||||| ||| | ||| | || ||| | || ||||| ||||| || ||||||| || Sbjct 3081 GGCACAAACGGTTACTCAAACGGCATTGTGCCGATGCTACGCGTGTTCGACGCCACCGCT 3022 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCC 104628 |||||||| |||| | ||| | | || | ||| || | || ||||| | ||||| Sbjct 3021 CGCTATGTCGATCAGGGTGG-CAACAAACGACCCGGAGCTTTTGCCGTCTACGTCGAGCC 2963 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| | || || | || |||||||| | ||| ||||| || | || || | Sbjct 2962 ATGGCATGGAGACGTCTTTGAATTCCTTGACCTTCGTAAGAACCATGGCAAAGAAGAAGT 2903 Query 104689 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 || |||| || || | |||| |||||||||| | || || || || Sbjct 2902 GC-GTGCACGTGACTTATTCTACGCTCTCTGGGTGCCCGACCTTTT 2858 >seq5488 Length=3555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 ||||| || || || || ||| ||| || || ||| || || || || | |||| | Sbjct 1811 TACCAGGCGTCGACGTCTGAGCTGTACGGCAAGGTCGTTGAGACGCCGCAGAGCGAGACG 1870 Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTCGT 7356 || || ||||| || ||||| ||||| ||| | ||| | | |||| | || || Sbjct 1871 ACGCCATTCTATCCGCGCTCCCCATACGGTGTCGCGAAGCTATACGGCTTCT-GGATCAC 1929 Query 7357 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 7416 | |||||||||||| | ||||| ||| ||||||| || |||||||||||||| || Sbjct 1930 CGTCAATTACCGCGAGGCGTACGGCATGTATGCGTGCAATGGCATCCTCTTCAACCACGA 1989 Query 7417 ATCACCGAGACGAGGTGCAGAC-TTTGTCACAAAGAAGATTACC 7459 || ||| | || ||| | ||| || ||||| |||||| || Sbjct 1990 GTCGCCGCGCCGTGGT-CGGACGTTCGTCACCCGCAAGATTTCC 2032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583190458747520