Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7597 154 4e-32 seq1153 136 1e-26 seq142 131 5e-25 >seq7597 Length=53330 Score = 154 bits (170), Expect = 4e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || || || || ||||| || || || |||||||| |||| Sbjct 51766 CAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAA 51707 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| | || ||||||||||| ||||| || || || ||||||| Sbjct 51706 GCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAA 51647 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || ||||| || || || | ||| || | ||| || ||||| || | ||||| | Sbjct 51646 TCTTCGCCTTTACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGC 51587 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || ||||| || || |||||||| Sbjct 51586 CGGTAAGCGTTTTCACGAAGATCTGCAT 51559 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || |||||||| || |||||||| || || || || || || Sbjct 51561 CATACCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 51502 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| ||||||||||| || || Sbjct 51501 TGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGG 51442 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || || || || || ||||| | || || | || Sbjct 51441 AGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTC 51382 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | ||||| || || || || || || ||||||||||| Sbjct 51381 AACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 Score = 84.2 bits (92), Expect = 7e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || ||||||||||||||||| || || || || || Sbjct 51333 CATGCCGCCACGGAGACGGAGGACTAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTC 51274 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| || || || || |||||||| || || ||||| ||||| Sbjct 51273 CGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGG 51214 Query 140627 AGGAAT 140632 ||| || Sbjct 51213 AGGGAT 51208 >seq1153 Length=45894 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || || || ||||| || ||||| || | Sbjct 1991 TTTGCATACCACCACGGAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGT 2050 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || || || ||||| || ||||||||||| || || ||||| | Sbjct 2051 AGTCAGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 2110 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || |||||||| || || || || || || || || | ||| || | Sbjct 2111 CCGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACG 2170 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || | || | ||||| || || || || || || || || ||||| Sbjct 2171 ATTCAACCTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || || ||||| ||| || ||||| |||||||| || | || || ||||| || ||| Sbjct 2587 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 2646 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||||||||| ||||| ||||| |||||||| || || || || ||||| || Sbjct 2647 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATC 2706 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 ||||| || ||||| || || | || || | || || || || || | ||||| ||| Sbjct 2707 TTAGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 2766 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || || ||||| |||||||| Sbjct 2767 GTCAAAGTCTTGACAAAGATCTGCAT 2792 >seq142 Length=23430 Score = 131 bits (144), Expect = 5e-25 Identities = 266/395 (67%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| || ||||| | || |||||||| || || || | || | Sbjct 6614 CCTGAGGAGATTTCCTCGATGGTGCTCACGAAGATGAAGGAGATCGCCGAGTCCTACCTC 6673 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || || ||| ||||| || || || ||||| || || || | || ||| Sbjct 6674 GGTGGCACTGTCACCTCTGCCGTTATCACCGTCCCCGCCTACTTCAACGACTCGCAACGT 6733 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || ||||| ||||| || | ||| || || | | ||||| | || ||||| || Sbjct 6734 CAAGCGACAAAGGATGCGGGTACCATCGCCGGTCTCCAGGTTCTCCGTATCATTAACGAG 6793 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | | | | || || | Sbjct 6794 CCCACGGCCGCTGCCATCGCCTACGGTCTCGACAAGAAGGCTCAGGGCGAGCGCAACGTC 6853 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || ||||| || | || |||||||| || ||||| || || || || | || ||||| Sbjct 6854 CTCATTTTCGACCTCGGCGGTGGTACCTTCGATGTCTCGCTCCTGACCATCGAGGAGGGC 6913 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || ||||||||||| || |||||||| || || || || || Sbjct 6914 ATCTTCGAGGTCAAGGCCACCGCTGGTGATACCCACCTTGGTGGTGAGGACTTCGACAAC 6973 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926 || |||||| || || || || || || ||||| Sbjct 6974 CGACTCGTTAACCACTTCGTCAATGAGTTCAAGCG 7008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515067091827344