Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5619 203 4e-47 seq38 176 5e-39 >seq5619 Length=11060 Score = 203 bits (224), Expect = 4e-47 Identities = 418/619 (68%), Gaps = 16/619 (3%) Strand=Plus/Plus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||||| |||||||| |||||||| || | |||||| ||||||||||| ||||| Sbjct 1904 GTGTAGGGCTCGAAGCATTCGTTGTTGCCGAGGATCTGACTCGTCGAGGCGGTAGGCATC 1963 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCC---- 78662 || ||||| || || || ||||||||||| | | || || |||| | || Sbjct 1964 GGAGCGACAAGCAGGGAGTTCCGAAGACCGTACTGTGCGACCTTTGCCTTCAAGCTCGCC 2023 Query 78663 --GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGAC 78720 |||||| | || | | | ||||||||| | ||| ||| || | ||||||||| Sbjct 2024 CAGTCCCATAGATCGGTGGGAGTGATCCCCCATAGGTCATATTGGAGCTTGCCCTCGGAC 2083 Query 78721 GCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA--TGACT 78778 || || |||| | |||||||||||| || |||||| || | || || | || Sbjct 2084 GCTGGGCTGCCCTGGTACGTCTCGTAAGGGCCAAACTCCTTCGCCATCTCACAGCTCGCT 2143 Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGG 78838 | ||| | || ||||| | | |||||||| | ||||||| ||| |||| || Sbjct 2144 TCAACAGCG--GCATGGTAGATGGTTTCGAAGATCTGCAGGTTGAGCCTGCGTGCCTCGG 2201 Query 78839 TCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAG 78898 | ||| |||| | || || |||||| | |||||||| ||||| |||||||| Sbjct 2202 GCGAGTCAAACGGCATGCGCAGGGCCATGAACGCGTCGGCCAGACCCTGCACGCCGATTC 2261 Query 78899 CGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGAT 78958 |||| || ||||||||||||||| || ||| || | || || ||| | Sbjct 2262 CGATGGGGCGGTGGCGCATGTTGGAACGACGCGCCTCCGGAATAGGATAGTGGTTGACGT 2321 Query 78959 CGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAAT 79018 |||||| |||||||||||| || ||| ||| ||||| |||| ||| || ||||| Sbjct 2322 CGATGATGCGGTTCAGGTTGAACGCGACCACCTTGGTCACGTCGTGCAACTTCTGGAAAT 2381 Query 79019 CAAAATGATTTCCTTT---GATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGG 79075 | || || || |||||| | ||| || | || || || ||||| || | Sbjct 2382 ---TGTACTTGCCATTCTCGATGAAGGACGGGAGCGCGATAGACGCGAGATTGCAGACAG 2438 Query 79076 CCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGG 79135 ||||||| || || || ||||| || || ||||| | ||| ||||||||||| | Sbjct 2439 CCGTCTCATCGGGAGACGAGTACTCGACAATCTCGGTGCAGAGATTGGACGACTTGATCG 2498 Query 79136 TGCCGATGTTCTTCTGGTT 79154 |||||| ||||| |||||| Sbjct 2499 TGCCGAGGTTCTGCTGGTT 2517 Score = 185 bits (204), Expect = 1e-41 Identities = 418/626 (67%), Gaps = 12/626 (2%) Strand=Plus/Minus Query 19841 GCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATC 19900 ||||||||||| ||| ||||| ||||| |||||||||||||||| || || || || || Sbjct 2526 GCCAAGTCAAACCAGCAGAACCTCGGCACGATCAAGTCGTCCAATCTCTGCACCGAGATT 2467 Query 19901 ATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCG 19960 | ||| || || || ||||| || || || ||||| ||||| | || ||| Sbjct 2466 GTCGAGTACTCGTCTCCCGATGAGACGGCTGTCTGCAATCTCGCGTCTATCGCGCTCCCG 2407 Query 19961 ACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTC 20020 | ||| || || | | | | || || ||| |||| |||||| ||| ||| Sbjct 2406 TCCTTCATCGAGAATGGCAAGTACAATTTCCAGAAGTTGCACGACGTGACCAAGGTGGTC 2347 Query 20021 ACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAG 20080 || || ||||| ||| ||||||| ||| || || | || |||||| Sbjct 2346 GCGTTCAACCTGAACCGCATCATCGACGTCAACCACTATCCTATTCCGGAGGCGCGTCGT 2287 Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140 || || ||||||||||| || |||| |||||||| ||||| |||||||||| |||||| Sbjct 2286 TCCAACATGCGCCACCGCCCCATCGGAATCGGCGTGCAGGGTCTGGCCGACGCGTTCATG 2227 Query 20141 ATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAG 20200 || || | | || ||| ||| |||| ||| ||||||| | |||||||| Sbjct 2226 GCCCTGCGCATGCCGTTTGACTCGCCCGAGGCACGCAGGCTCAACCTGCAGATCTTCGAA 2167 Query 20201 GCCGTGTACCACGCGGCCCTCCTGGAATCG---TGCGAACTCGCCAAAGAGGACGGCCCG 20257 || | ||||| || || | ||| || || || | || || ||| ||||| Sbjct 2166 ACCATCTACCATGCCGC---TGTTGAAGCGAGCTGTGAGATGGCGAAGGAGTTTGGCCCT 2110 Query 20258 TACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGC 20317 |||||||||| | |||| || ||||||||||| | ||||| ||| | ||||| Sbjct 2109 TACGAGACGTACCAGGGCAGCCCAGCGTCCGAGGGCAAGCTCCAATATGACCTATGGGGG 2050 Query 20318 GTCACTGAGAATGAGTTTTG-----GAGCG-CCCTCAAGGTTGAGATCAAGACCCACGGG 20371 ||||| | || | || | ||| | | |||| || || |||| Sbjct 2049 ATCACTCCCACCGATCTATGGGACTGGGCGAGCTTGAAGGCAAAGGTCGCACAGTACGGT 1990 Query 20372 CTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGG 20431 ||||| ||||| |||| ||||| || ||||| ||||||||||| |||||| | || Sbjct 1989 CTTCGGAACTCCCTGCTTGTCGCTCCGATGCCTACCGCCTCGACGAGTCAGATCCTCGGC 1930 Query 20432 AACAACGAGGCTTTCGAGCCGTACAC 20457 |||||||| |||||||| ||||| Sbjct 1929 AACAACGAATGCTTCGAGCCCTACAC 1904 Score = 150 bits (166), Expect = 2e-31 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| ||||| ||||||||||||||||| || ||||||||||| ||||| | ||||| Sbjct 1489 CGCGTG--CGCAAGTAGTACATGCCCGTCTTCAGGCCCTTCTTCCAGCCGTAGAAGTGCA 1546 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | |||| ||||| | ||| | | || || | | || |||||||||||| |||||| Sbjct 1547 TGCTCGTCAGCTGGCCCATAGTAGGCGACTGAAGGTGGACGTTGAGCGACTGCGACTGGC 1606 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 |||| | || || ||||| || || | ||||| |||| ||| || | |||||||||| Sbjct 1607 AGATGAAGGCTCCCCGGTCAGCAGCAAGGTCGAGGACCTTCTTCTGAGAGATCTCCCAGA 1666 Query 78365 TGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATG 78399 |||| ||| || ||||||| || || ||||| Sbjct 1667 CGGTCTTGTAGATCGCCTTCACGTCGTCGGGGATG 1701 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20606 ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATC 20665 |||||| | || | |||| || |||| |||||| ||||| ||| | ||||||| || Sbjct 1700 ATCCCCGACGACGTGAAGGCGATCTACAAGACCGTCTGGGAGATCTCTCAGAAGAAGGTC 1641 Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTC 20725 ||||| | || || || || || |||| |||| |||||| ||||||||||| ||| | Sbjct 1640 CTCGACCTTGCTGCTGACCGGGGAGCCTTCATCTGCCAGTCGCAGTCGCTCAACGTCCAC 1581 Query 20726 ATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGG 20785 | || || | ||| |||||| |||||| | ||||||||| | ||||| Sbjct 1580 CTTCAGTCGCCTACTATGGGCCAGCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGC 1521 Query 20786 CTCAAGACGGGCATGTACTATCTGCGGACCCG 20817 || ||||||||||||||||| |||| || || Sbjct 1520 CTGAAGACGGGCATGTACTACTTGCGCACGCG 1489 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 ||| || |||||||| ||| ||||||||||||||| |||||||||||||| || || Sbjct 3203 CGCACAATCCTTGAGAGTCGAGTAGATGCCCTCGATGGAGTCGTCCTTCATGCACACAAG 3262 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 ||||| || ||| |||||| || ||||||||||| ||||| |||| || || Sbjct 3263 AAAGCATGAACTCAGCTGGGGGTTGGGAGTGCCGGCGTTGAAAAGGGTGGGCGATGCATG 3322 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCC 79862 |||||| || | |||||| | ||| || ||| || || || || || Sbjct 3323 GGTGAAGTACCGCTCCGACATCAGGTGGTAGGTTTCCAGAACACGGTCGATATCAGATCC 3382 Query 79863 GTGGATGCCGACCGCGACGCGCATGA 79888 ||| || || || || || ||||||| Sbjct 3383 GTGTATACCAACAGCAACACGCATGA 3408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19112 CTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACA 19171 ||| ||||||| || || || || || || || || || || || | || || Sbjct 3412 CTTCTCATGCGTGTTGCTGTTGGTATACACGGATCTGATATCGACCGTGTTCTGGAAACC 3353 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| |||||||| || || |||||| || || |||| ||||||||||||||||| Sbjct 3352 TACCACCTGATGTCGGAGCGGTACTTCACCCATGCATCGCCCACCCTTTTCAACGCCGGC 3293 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || |||||| ||| || || || || ||| |||||||| ||| ||| ||| Sbjct 3292 ACTCCCAACCCCCAGCTGAGTTCATGCTTTCTTGTGTGCATGAAGGACGACTCCATCGAG 3233 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCG 19321 ||||||||| ||| |||||||| || ||| Sbjct 3232 GGCATCTACTCGACTCTCAAGGATTGTGCG 3203 >seq38 Length=96116 Score = 176 bits (194), Expect = 5e-39 Identities = 359/528 (68%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | |||||||||| | | ||||||||| ||||| || |||| Sbjct 70594 TGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTTTCCAAGGACC 70535 Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | |||||| |||| | |||| |||| |||| ||||||||| | || || | Sbjct 70534 TCCACGATTGGAACAACCGCCTCAACGACGATGAGCGTCATTTCATCTCGCACGTGCTCG 70475 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769 |||||||||| || || || || |||| || || | | | | || ||||| | Sbjct 70474 CCTTCTTCGCTGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCGGTTCTCCAATG 70415 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCC 59829 | |||||| |||||||| || | ||||||| | ||| | | ||| |||| Sbjct 70414 AGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCC 70355 Query 59830 ACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG 59889 |||| ||||| |||||||| | ||||| | || |||||||||| | || | Sbjct 70354 ACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATCCCAAGCAGCGCGAGC 70295 Query 59890 GTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 || ||| ||||| |||||| | || ||| | || | || || || ||||| || Sbjct 70294 ACCTTTTCGACGCCATCGAGACGATTCCTTGCA-TCAAGAAGAAGGCGGACTGGGCTTTG 70236 Query 59949 CAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| | | |||| | | || || | || ||| | ||||| || ||| Sbjct 70235 CACTGGATCTCTGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGCTTTCGCGGCTGTG 70176 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || |||||||||||||| || || | || ||||||||||| ||||| ||||| Sbjct 70175 GAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTG 70116 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||| || || | |||||||| ||||| || || || ||||||||| Sbjct 70115 ATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGC 70068 Score = 120 bits (132), Expect = 3e-22 Identities = 339/511 (66%), Gaps = 16/511 (3%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGG---GACAAG 59669 || |||||| ||||||||||||| |||||||| ||||| | ||| ||| ||||| Sbjct 72120 TCGTTCTGGACCGTCGAGGAGATCAACCTCGCCAACGACCTCATGGACTGGAACTACAAG 72179 Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| |||||| || |||||| || || || |||||||| || || Sbjct 72180 CTCAACGCAAACGAGCGCCACTTCATCTCCTACGTGCTTGCTTTCTTCGCCGCCTCGGAC 72239 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || |||| || ||| | | | | || || || || || ||| |||||||| Sbjct 72240 GGCATCGTGAACGAGAATCTCGTCGAGCGGTTCTCTAACGAGGTACAGGCCGCCGAGGCG 72299 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | || || | | ||| | | |||| | | ||||| |||||||||||||| Sbjct 72300 CGCTGCTTTTATGGCTTCCAGATCATGATCGAGAATGTGCACTCGGAGACGTACTCGCTG 72359 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCCATAG 59907 | ||||| | || ||||||| || | ||| || || |||||| ||||| | Sbjct 72360 CTCATCGACACGTATATCAAGGACCCCG--CTGAACGCGCGTTCCTGTTCGACGCCATCG 72417 Query 59908 AGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TGAGTCCTGG 59965 | | | |||| | | | | || || || ||||| ||| |||| |||| | | Sbjct 72418 ACACCATCCCGTGTA-TCCGTAAGAAGGCGGACTGGGCGTTGCGCTGGATTGAGGAC--G 72474 Query 59966 AGC-ATCA---TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCT 60021 ||| ||| ||||| | | || | || ||||| || || || | ||||||| Sbjct 72475 AGCGTTCAGTGTTTGCGGAGAGGCTGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCT 72534 Query 60022 CTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTT 60081 | || |||||| || ||||||||||| || ||||| || | |||||||| ||| | Sbjct 72535 CCGGGTCGTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGT 72594 Query 60082 TCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 |||| |||||||| || ||| |||||||| Sbjct 72595 TCTCTAACGAGCTTATCAGCCGAGACGAGGG 72625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548458647909120