Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq38 143 3e-29 seq5619 95.1 1e-14 seq5488 93.3 5e-14 >seq38 Length=96116 Score = 143 bits (158), Expect = 3e-29 Identities = 324/484 (67%), Gaps = 10/484 (2%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 ||||| || |||| || || ||||| || || |||||||| | ||| ||||||| Sbjct 70090 TCATTGGAGAACGTGAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCA 70149 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||||||| ||||||||| || || ||| ||| || || || || || | |||||| Sbjct 70150 AAGGAACCAGAGAAGAAGATACCCTCCACAGCCGCGAAAGCCACGAGCCGCTCCGCGAAG 70209 Query 74910 GGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | | || | || ||||| | |||||| || || || |||| ||| Sbjct 70210 GCGGACTCCTTGTCAGAGATCCAGTGCAAAGCCCAGTCCGCCTTCTTCTTGATGCAAGGA 70269 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC--GGGATCCTTGACGAGCTTGT 75024 | || ||||| || | ||| ||| ||| | || | ||||||||||| | | ||| Sbjct 70270 ATCGTCTCGATGGCGTCGAAAAGG--TGCTCGCGCTGCTTGGGATCCTTGATGTACGTGT 70327 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGA 75084 | || | || ||||| |||||||| || || ||| | | |||| | |||||| Sbjct 70328 CGATGAGCAGCGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGA 70387 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | || ||||| || ||| || || || || || | | | | ||||| | | Sbjct 70388 AGCAGCGTGCCTCGGCGGCCTGGACCTCATTGGAGAACCGCTCGACAAGGTTCTCGTTCA 70447 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 |||||||||||||||| ||||| || || || || ||| || || |||||||||| Sbjct 70448 CGATGCCGTCCGAGGCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGCTCATCGT 70507 Query 75205 CAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCC 75261 | ||| | |||| |||||| | |||||| | | || ||||||||| | |||| Sbjct 70508 CGTTGAGGCGGTTGTTCCAATCGTGGAGGTCCTTGGAAAGGTCCATCTCCTCGGCAGTCC 70567 Query 75262 AGAA 75265 |||| Sbjct 70568 AGAA 70571 Score = 127 bits (140), Expect = 2e-24 Identities = 334/505 (66%), Gaps = 10/505 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || |||| ||| || | || || || |||| | || ||||| | || |||||| Sbjct 72625 CCCTCGTCTCGGCTGATAAGCTCGTTAGAGAACGTCAACCCCGGCATCAACCCCCGCTTC 72566 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||| || ||||| ||| || || |||||| | ||| ||||| |||||| Sbjct 72565 TTCAGCCAGAAAATGGCGGCGAACGACCCGGAGAAGAACACGCCCTCGACTGCCGCAAAT 72506 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTC 74944 ||||| || | | ||| ||| || | || ||| ||||| | ||||| || Sbjct 72505 GCGACCAGCCTCTCCGCAAACACTGAA-CGCTCGTCCTCAATCCAGCGCAACGCCCAGTC 72447 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 || || | | | || |||| || ||||| || | ||| ||| || || Sbjct 72446 CGCCTT-CTTACGGATACACGGGATGGTGTCGATGGCGTCGAACAGGAACGCGCGTTCAG 72388 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 |||| ||||||| | |||| || | || |||||||||||||| || | |||| Sbjct 72387 CGGGGTCCTTGATATACGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGCACATTCTCGA 72328 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | |||| | | || || | |||||||| || |||||| || || || || Sbjct 72327 TCATGATCTGGAAGCCATAAAAGCAGCGCGCCTCGGCGGCCTGTACCTCGTTAGAGAACC 72268 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| |||||| | ||||||||||||||||||||||| ||||| || || Sbjct 72267 GCTCGACGAGATTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAAGCAAGCACGTAGG 72208 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTT---GTCCCAATCCTTCAGGTCCCCCGCCA 75240 ||| ||||||||||| | | |||| || || ||| ||| | ||||| || | Sbjct 72207 AGATGAAGTGGCGCTCGTTTGCGTTGAGCTTGTAGTTCCAGTCCATGAGGTCGTTGGCGA 72148 Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265 | ||||||||||| |||||||| Sbjct 72147 GGTTGATCTCCTCGACGGTCCAGAA 72123 >seq5619 Length=11060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| ||| ||| ||| || |||||||| | ||||||| | | ||| | |||| Sbjct 1685 AAGGCGATCTACAAGACCGTCTGGGAGATCTCTCAGAAGAAGGTCCTCGACCTTGCTGCT 1626 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || || || || | |||| |||||| ||||| || ||| || | | || ||| | Sbjct 1625 GACCGGGGAGCCTTCATCTGCCAGTCGCAGTCGCTCAACGTCCACCTTCAGTCGCCTACT 1566 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| | || ||| |||||||| ||||| ||||||||||| || |||||||| ||| Sbjct 1565 ATGGGCCAGCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGCCTGAAGACGGGCATG 1506 Query 55910 TACTATCTGCGGACCCG 55926 ||||| |||| || || Sbjct 1505 TACTACTTGCGCACGCG 1489 >seq5488 Length=3555 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 124673 AATCTTGCGCGTCACAAAC-TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGC 124731 ||||||||| || || ||| || || || || ||| |||||||||||||| || |||| Sbjct 2029 AATCTTGCGGGTGACGAACGTCCGA-CCACGGCGCGGCGACTCGTGGTTGAAGAGGATGC 1971 Query 124732 CAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGA 124791 || | |||||| |||| ||||||| ||||||||| || || ||||| | || | | Sbjct 1970 CATTGCACGCATACATGCCGTACGCCTCGCGGTAATTGACGGTGATCCAGAAGCCGTATA 1911 Query 124792 GCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 |||| | || || || ||| || || |||||||| || Sbjct 1910 GCTTCGCGACACCGTATGGGGAGCGCGGATAGAATGGCGT 1871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547150005750400