Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2039 107 2e-18 seq8570 82.4 6e-11 >seq2039 Length=45597 Score = 107 bits (118), Expect = 2e-18 Identities = 204/298 (68%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 ||| ||||| |||| | ||||||||| | ||| || |||| | |||| ||| | Sbjct 8572 GGGATTCCACGCGCTGAGGATGATGCGACGGTCGGTGGGATTGTGCTTGATTTTGTCGAT 8513 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACT 30236 | | ||| ||||||||||| ||| | || | || || | | || || ||| | Sbjct 8512 GCACTCTTGGAGCTGATCCACGCCCTTGCCGGTATAATCGGTGTCGCAA-TCGACGTATT 8454 Query 30237 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30296 || || || || ||||| |||||||| ||||| || || ||||| |||||| || | Sbjct 8453 GCGCGCCAAAGTGTCTCCATTGGAACCCATACACGGGCCCTAGGTCGCCCTCTCGCCGAT 8394 Query 30297 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30356 | | || || | ||| || | || || | || ||||| | ||||||||||| | || Sbjct 8393 GTCCTAAACCACGCTTCTCGAGGAACTCCTTCGAGCCGTTACCATCCCAGATCTTGATCC 8334 Query 30357 CCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 ||||| | || |||| |||||||| ||| | || | | ||||| | |||||||| Sbjct 8333 CCTTCGCGGACAGCTGTTTGGAGTCCGTGCATCCGCGTATAAACCATAAGAGCTCCTC 8276 >seq8570 Length=955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 52761 CCAGAGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGACGTGCGGAGCCGT 52819 ||| |||| ||||||||||| || ||| |||||| || ||||| || ||| | Sbjct 651 CCACAGATCGGCGACAAGTTCGCTTCGCGTCACGGT-CAGAAGGGTACCATCGGTATCA- 594 Query 52820 CCTGAC-CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCA 52878 ||| | ||||||||||||||| ||| ||| || | ||||||| ||||||||| Sbjct 593 CCTACCGCCAGGAGGACATGCCGTTCACGGCGGAGGGCATCACGCCCGACATCATCATCA 534 Query 52879 ACCCCCACGCCTTTCCCTCCAGGATGAC 52906 ||||||||||| ||||||| | ||||| Sbjct 533 ACCCCCACGCCATTCCCTCTCGTATGAC 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406262623991616