Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1153 109 3e-19 seq7597 91.5 9e-14 >seq1153 Length=45894 Score = 109 bits (120), Expect = 3e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||||||||||| |||||||||||||| || || || || | || || ||||| Sbjct 2590 TGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGC 2649 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | |||||| ||||| || || | ||||||||||| |||| || Sbjct 2650 TTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATC-TT 2708 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| ||| || || | ||| || || || ||||| Sbjct 2709 AGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2768 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| |||||||| Sbjct 2769 CAAAGTCTTGACAAAGATCTGCAT 2792 >seq7597 Length=53330 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | |||||| || |||||| || ||||| || ||||| Sbjct 51557 CCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 51498 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | ||| || ||||| || || Sbjct 51497 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGG 51438 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || ||| | ||| |||||| ||| || Sbjct 51437 ATACCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAAC 51379 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| ||||| || || || | || || || |||||||||||| Sbjct 51378 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 51330 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||||| || | |||||| ||| |||||| || ||||| || || Sbjct 52298 GTTGCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 52239 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || ||| |||| || | || || || || || || | ||||| || ||||| Sbjct 52238 GGAGAGCGTACGCCCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGG 52179 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||| || | || ||| | || ||||| || Sbjct 52178 AGGGATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTGTCGATCGTGTCGGAAGACT 52120 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || |||| || || || || || || | || || ||||| ||||||||| Sbjct 52119 CGACCTCCAACGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATG 52067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314692592519984