Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7597 125 6e-24 seq1153 104 2e-17 >seq7597 Length=53330 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| |||| |||||||| || ||| | ||| Sbjct 51559 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCC 51618 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| ||||| || ||||| || || ||||| Sbjct 51619 GATACCATCGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 51678 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| ||||| || | || || | |||| | |||||||||||| Sbjct 51679 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGGACCTTGTCCGATTACAAC 51738 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 51739 ATCCAGAAGGAGTCCAC 51755 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| |||||| | || || ||||| || || |||| Sbjct 51839 CATGCAAATCTTCGTGAAGACGTTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTC 51898 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || || || |||||||| || ||||| || ||||| || Sbjct 51899 GGATACCATCGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCA 51958 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || |||| ||| | ||| | || |||||||| Sbjct 51959 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGTACCTTGTCGGATTACAA 52018 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || ||||| | || ||||| |||||||| Sbjct 52019 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGCTTGCGTGGTGGCAT 52069 >seq1153 Length=45894 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||||||||||||| | || ||||| || || || |||| Sbjct 1997 ATGCAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCG 1938 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || ||||| || Sbjct 1937 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 1878 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || || | || |||| || |||||| Sbjct 1877 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAAC 1818 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || | || | ||| | || ||||| Sbjct 1817 ATCCAGAAGGAGTCGACCCTTCACCTCGTCCTTCGTCTACGCGGTGG 1771 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || || || || || || |||| Sbjct 2792 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCG 2733 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || || || || Sbjct 2732 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 2673 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||| |||| || || ||| | |||||||| ||| Sbjct 2672 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGTCGTACCCTCTCCGATTATAAC 2613 Query 27168 ATTCAAAAGGAG 27179 ||||| |||||| Sbjct 2612 ATTCAGAAGGAG 2601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434865948840960