Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2039 86.0 6e-12 >seq2039 Length=45597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 170/247 (69%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 34265 GAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGG 34324 |||||||| | ||||| | | || |||| || |||| |||| || | |||| Sbjct 8276 GAGGAGCTCTTATGGTTTATACGCGGATGCACGGACTCCAAACAGCTGTCCGCGAAGGGG 8335 Query 34325 GTGAAGATCTGGGACGCTCACGGGTCTCGA--GACTTTCTGGACAAGCGGGGGTTCCCAT 34382 | ||||||||||| | | |||| ||||| || || || || ||||| || || | Sbjct 8336 ATCAAGATCTGGGATGGTAACGG--CTCGAAGGAGTTCCTCGAGAAGCGTGGTTTAGGAC 8393 Query 34383 CTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGG 34442 |||| ||||||||| | || || || || |||||||| |||||||||||||| ||| Sbjct 8394 ATCGGCGAGAGGGCGACCTAGGGCCCGTGTATGGGTTCCAATGGAGACACTTTGGCGCGC 8453 Query 34443 AGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG- 34501 | || | |||| | || ||| | || |||| | ||| ||||| || | ||| Sbjct 8454 AATACGTCGATTGCGACACCGATTATACCGGCAAGGGCGTGGATCAGCTCCAAGA-GTGC 8512 Query 34502 ATCGACA 34508 ||||||| Sbjct 8513 ATCGACA 8519 Score = 86.0 bits (94), Expect = 6e-12 Identities = 170/247 (69%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 6837 TGTCGAT-CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCC 6895 ||||||| ||| | || ||||| ||| | |||| || | ||| || | |||| | Sbjct 8519 TGTCGATGCAC-TCTTGGAGCTGATCCACGCCCTTGCCGGTATAATCGGTGTCGCAATCG 8461 Query 6896 CGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 || | ||| |||||||||||||| |||||||| || || || || | ||||||||| Sbjct 8460 ACGTATTGCGCGCCAAAGTGTCTCCATTGGAACCCATACACGGGCCCTAGGTCGCCCTCT 8401 Query 6956 TCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTC--TCGAGACCCGTGAGCGTCCCAGA 7013 |||| | || || ||||| || || || || ||||| |||| | | ||||||| Sbjct 8400 CGCCGATGTCCTAAACCACGCTTCTCGAGGAACTCCTTCGAG--CCGTTACCATCCCAGA 8343 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 |||| | |||| | || |||| |||| || |||| || | | ||||| | | Sbjct 8342 TCTTGATCCCCTTCGCGGACAGCTGTTTGGAGTCCGTGCATCCGCGTATAAACCATAAGA 8283 Query 7074 GCTCCTC 7080 ||||||| Sbjct 8282 GCTCCTC 8276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448208339554560