Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1153 105 6e-18 seq7597 96.9 3e-15 >seq1153 Length=45894 Score = 105 bits (116), Expect = 6e-18 Identities = 155/213 (73%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCA 39132 |||||| || || |||||||| || || || || || |||| |||| || || | || Sbjct 2303 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCC 2361 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||||| ||||| || || || |||||||||||||||| || | || ||| |||||| Sbjct 2362 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2421 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 || ||| || | ||| | | | ||| ||| ||||| || || | ||||| | Sbjct 2422 TGAATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGT 2480 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||||| ||| || |||||||| ||||| Sbjct 2481 CTTCCCCGTCAACGTCTTGACAAAGATCTGCAT 2513 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || |||||||||| || || || | || || || || Sbjct 2590 TGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGC 2649 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| | || | | ||| |||||| ||| || Sbjct 2650 TTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTA 2709 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | || || |||||| || || | ||||| | || || ||| Sbjct 2710 GCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 2769 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| ||||| Sbjct 2770 AAAGTCTTGACAAAGATCTGCAT 2792 >seq7597 Length=53330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || | ||||| | ||||| || || || ||| || || || || ||||| Sbjct 52070 CATGCCACCACGCAAGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 52011 Query 39114 GG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 | |||| || || |||| || ||||| || || || || ||||||||||||||||||| Sbjct 52010 CGACAAG-GTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGG 51952 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| ||||| ||| ||| || | | | | ||||| ||||| Sbjct 51951 GAGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACT 51892 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | |||||| | || || |||| ||| || || ||||||||||| Sbjct 51891 CGACCTCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCAT 51840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429495091880624