Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7597 152 1e-31 seq1153 149 1e-30 seq3696 111 4e-19 >seq7597 Length=53330 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || |||| |||||||| | ||| || | || || Sbjct 52051 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCC 51992 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || |||||||| || || || ||||||||| Sbjct 51991 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 51932 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||||| || || | || || || | |||||| ||| Sbjct 51931 TGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGCGTGATGGTC 51872 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | |||||| Sbjct 51871 TTGCCAGTCAACGTCTTCACGAAGATTTGCAT 51840 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||||||||||||||| || || |||| |||||||||| ||| || | |||||| || | Sbjct 51766 CAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAA 51707 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| | || || || || || ||||| || |||||||| || | Sbjct 51706 GCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAA 51647 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || |||||||| || |||| ||| || || | ||||| ||||||| Sbjct 51646 TCTTCGCCTTTACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGC 51587 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | ||||| | ||| | ||||| Sbjct 51586 CGGTAAGCGTTTTCACGAAGATCTGCAT 51559 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| ||||| || || || || |||| ||||| || | | || | || || Sbjct 51542 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCGTCC 51483 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| ||||| |||||||| || ||||| |||||||| Sbjct 51482 TCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGGATACCCTCCTTGTCC 51423 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||||||||| | || || || | ||||||||| Sbjct 51422 TGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAACCTCAAGGGTGATCGTC 51363 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 51362 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 >seq1153 Length=45894 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| || | | || | ||||| Sbjct 1786 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCC 1845 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| ||||| |||||||| Sbjct 1846 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 1905 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | || || || | ||||| ||| Sbjct 1906 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTC 1965 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||| || | ||| | |||||| Sbjct 1966 TTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||| || || |||| ||||| |||| ||| || | ||||| || | Sbjct 2306 CAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAA 2365 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| || || || ||||||||||| || || |||||||| || | Sbjct 2366 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 2425 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| |||||| ||||| ||||| || | || || || | ||||| ||||| | Sbjct 2426 TCTTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCC 2485 Query 225686 CCGTCAAAGTTTT 225698 ||||||| || || Sbjct 2486 CCGTCAACGTCTT 2498 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||||||| || || || | || ||||||| | || | ||||| || || Sbjct 2587 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 2646 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| ||||| || || || ||||| || || ||||| |||||||| |||||| Sbjct 2647 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATC 2706 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||||||| ||||||||||| || | || || || | ||||| |||||||| Sbjct 2707 TTAGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 2766 Query 225688 GTCAAAGTTTT 225698 |||||||| || Sbjct 2767 GTCAAAGTCTT 2777 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || || | ||||| || | | || | || || Sbjct 2014 AGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCC 2073 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||| || || || ||||| || || ||||| ||||| || Sbjct 2074 TCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTATCC 2133 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || ||||| || || || | ||| || || || ||||||||| Sbjct 2134 TGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACGATTCAACCTCCAAGGTGATCGTC 2193 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | |||||| Sbjct 2194 TTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| || || || ||||| ||||| || | ||||| || | | ||| Sbjct 2800 CGAAGACGGAGGACGAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTG 2859 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||||||||| ||||||||||| || || |||||||| ||||||| | Sbjct 2860 CGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACTT 2919 Query 225613 T 225613 | Sbjct 2920 T 2920 >seq3696 Length=1017 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| ||| | |||| || |||| | |||||||||||||| || |||||||| | Sbjct 149 TACAATGTTGTAGTTACTGCTCATGGGATCGTTATGATTTTCTTCTTAGTTATGCCAAGT 90 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | || || || ||||| ||||| || | || || | |||||||| ||||||||||| Sbjct 89 CTAATCGGTGGGTTCGGGAATTGGTTGTTACCAGTATTAATTGGTGCACCTGATATGGCA 30 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTG 7706 || ||||| ||||||||||| ||||| || Sbjct 29 TTCCCAAGACTTAACAATATTAGTTTCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192383785255712