Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2039 102 7e-17 >seq2039 Length=45597 Score = 102 bits (112), Expect = 7e-17 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 |||| || || | ||||||| ||||||||||| | | |||| || || ||||| ||| Sbjct 8937 TGGGGAAAGGCCGCGGCTCCCGCTCGAGCTGAACCTTGAGCGCGTCGACATGGTCGCGGT 8878 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACA---AACTCTCCCGGTTCTAGCCCGGTGACGT 29726 ||||||| || || || || |||| | | |||| ||||| ||||||||| Sbjct 8877 AGACGTGCGCGTCGCCGAG---CTGGATAATGAGCTCTTGAGGTTCGGTGTCGGTGACGT 8821 Query 29727 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCA 29786 | |||| ||| | ||||| || | ||| ||||||||| ||||| | ||||| |||| Sbjct 8820 GCGCCACCATATGGGTGAGCAGGGCGTAAGAGGCGATGTTGAAGGGGATACCGAGGCCCA 8761 Query 29787 TGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCT 29822 ||| | || | |||||| | | | || ||||||| Sbjct 8760 GGTCGGCGGAGCGCTGGTACATCAGACAGGAGAGCT 8725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || ||||| |||||||| ||||| || || ||||| |||||| || || | || Sbjct 8445 AAGTGTCTCCATTGGAACCCATACACGGGCCCTAGGTCGCCCTCTCGCCGATGTCCTAAA 8386 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | ||| || | || || | || ||||| | ||||||||||| | ||||||| || Sbjct 8385 CCACGCTTCTCGAGGAACTCCTTCGAGCCGTTACCATCCCAGATCTTGATCCCCTTCGCG 8326 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30186 || |||| |||||||| ||| | || | | ||||| | |||||||| Sbjct 8325 GACAGCTGTTTGGAGTCCGTGCATCCGCGTATAAACCATAAGAGCTCCTC 8276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406115441300128