Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7597 129 1e-24 seq1153 116 9e-21 >seq7597 Length=53330 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||||||||| || |||||||| || ||||||||||| || | | || | Sbjct 51549 GAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCG 51490 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | |||||||| | | ||| || || Sbjct 51489 TCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGGATACCCTC 51430 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | ||||||| ||| || ||||| || Sbjct 51429 CTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAACCTCAAGGGT 51370 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| ||||| | |||||| Sbjct 51369 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || |||||||||||||||| || || | |||||| || | Sbjct 51766 CAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCTCAA 51707 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | |||||| || | | || || ||||| || |||| Sbjct 51706 GCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAA 51647 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || || || || |||||||| ||||| |||| Sbjct 51646 TCTTCGCCTTTACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGC 51587 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||||| |||||| Sbjct 51586 CGGTAAGCGTTTTCACGAAGATCTGCAT 51559 Score = 107 bits (118), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || ||||| || |||||||||||||| | || || | || || Sbjct 52052 GAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTC 51993 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || ||||||||||| | ||||||||| | | ||| || ||||| Sbjct 51992 CTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTG 51935 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || || || | || | | | || || ||| || ||||| || || Sbjct 51934 TCTTGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGCGTGATG 51875 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||||||||||| ||||| Sbjct 51874 GTCTTGCCAGTCAACGTCTTCACGAAGATTTGCAT 51840 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || ||||||||||| |||| | || | ||| || Sbjct 52279 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCC 52220 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||||| |||||||| || | |||||| |||| | ||| || ||||| || Sbjct 52219 TCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 52160 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| ||| || || | ||||| || Sbjct 52159 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAACGTAATGGTC 52100 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || |||| |||||| Sbjct 52099 TTTCCCGTAAGGGTCTTGACAAAGATCTGCAT 52068 >seq1153 Length=45894 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||||| || ||||||||||| || | | || | ||||| Sbjct 1786 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCC 1845 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| || ||||| || Sbjct 1846 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 1905 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| || ||| || || ||||| || || Sbjct 1906 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATGGTC 1965 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||||| ||||| Sbjct 1966 TTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 100 bits (110), Expect = 7e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||| || ||||||||||| |||| || || | ||||| || | Sbjct 2306 CAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAA 2365 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | || ||| || ||||| || |||| Sbjct 2366 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 2425 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | |||| ||| ||| || || ||||| || || || | Sbjct 2426 TCTTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCC 2485 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| || |||| |||||| Sbjct 2486 CCGTCAACGTCTTGACAAAGATCTGCAT 2513 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || || || ||||| || || |||||||| || | | || | Sbjct 2007 GAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCG 2066 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || || ||||| || | ||||||||||| | ||| || || Sbjct 2067 GCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTC 2126 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || ||| ||||| | || | | || || || || || | || Sbjct 2127 CTTATCCTGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACGATTCAACCTCCAAGGT 2186 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| ||||||| ||||| Sbjct 2187 GATCGTCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153678170441808