Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1153 190 4e-43 seq7597 156 9e-33 seq38 129 1e-24 seq2399 98.7 2e-15 seq6239 93.3 9e-14 >seq1153 Length=45894 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | || || || |||||||||||||| | Sbjct 1770 ACCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1829 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||||||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 1830 AAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 1889 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 1890 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGAC 1949 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||||||||| || ||||| Sbjct 1950 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || || ||||||||||||| Sbjct 1998 ACCACCACGGAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGA 2057 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| ||||| || || |||||||||| || || ||||| || Sbjct 2058 GAGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 2117 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || ||||||||||| || ||| | ||||| || ||||| | ||| || Sbjct 2118 GATACCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACGATTCAAC 2177 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||||||||| | ||||| ||||| || ||||| Sbjct 2178 CTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 174 bits (192), Expect = 3e-38 Identities = 159/198 (80%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 ||||| || || |||||||||||||| | |||| ||||| |||||||| || || || || Sbjct 2317 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCCTCAAGCTGCTTGCC 2375 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||||| ||| || ||||| ||| || ||||||||||| || ||||| || || Sbjct 2376 AGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTT 2435 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| ||||| |||| ||||| ||||||||||| ||||| |||||||| || Sbjct 2436 CACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCCGTCAACGT 2495 Query 283082 CTTAACGAATATCTGCAT 283099 ||| || || |||||||| Sbjct 2496 CTTGACAAAGATCTGCAT 2513 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || ||||| || || | || || || |||||||| ||||| || || Sbjct 2596 GTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGTTGCTTGCCA 2655 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||| | ||| || |||||| || |||||||||||||| |||||||| || || Sbjct 2656 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 2715 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | ||||| |||||||| | ||||| ||||| ||||| ||||| || ||||||||| Sbjct 2716 ACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 2775 Query 283083 TTAACGAATATCTGCAT 283099 || || || |||||||| Sbjct 2776 TTGACAAAGATCTGCAT 2792 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| ||||| ||| |||| || || ||||| | ||||| ||| Sbjct 2970 CCCTCCTTGTCCTGGATCTTGGCTTTGACGTTATCAATGGTATCCGAGGACTCGACCTCG 3029 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 3030 AGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 3073 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || ||||| | |||| ||||| || ||||||||||||| Sbjct 2793 ACCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCAGA 2852 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || |||||||| ||||| | ||| || ||||| || Sbjct 2853 AAGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 2912 Query 282992 AATAC 282996 ||||| Sbjct 2913 AATAC 2917 >seq7597 Length=53330 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||||| ||| || |||| || | || || || ||||||||||| || | | Sbjct 52066 CCACCACGCAAGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 52007 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || || || ||||| | ||| || ||||| || Sbjct 52006 AAG-GTACGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 51948 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||| || || ||| ||||||| || ||||| | ||||| Sbjct 51947 GATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTATCGATGGTATCCGACGACTCGAC 51888 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 51887 CTCAAGCGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCAT 51840 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | || || || |||||||||||||| | Sbjct 51558 ACCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGA 51499 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || ||||| ||||| | |||||| ||||| || Sbjct 51498 GAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGG 51439 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || || ||| | || || ||||| || | || || Sbjct 51438 GATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAAC 51379 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 51378 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 51331 Score = 141 bits (156), Expect = 2e-28 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || || ||||||||||| || | |||| || || |||||||| || || || || || || Sbjct 51749 TCCTTCTGGATGTTGTAATCGGACAAG-GTCCGCCCATCCTCAAGCTGCTTGCCAGCGAA 51691 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| || || || ||| ||||| ||||||||||| || ||||| || |||||| | Sbjct 51690 GATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTTACGTT 51631 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| || || || | |||||| || |||||||| ||||| || || | || || || Sbjct 51630 GTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTAAGCGTTTTCAC 51571 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 51570 GAAGATCTGCAT 51559 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| | ||| || || |||||||||||||| | Sbjct 52294 CCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 52235 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| | || ||||| || ||||| | || || || || || Sbjct 52234 AGCGTACGCCCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGG 52175 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 52174 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACC 52115 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 52114 TCCAACGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCAT 52068 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| ||||| || || || ||| | ||||| |||||||| | || || || Sbjct 51146 CCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCA 51087 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || || | |||||| ||||| |||||||| Sbjct 51086 AGAGTGATGGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 51043 >seq38 Length=96116 Score = 129 bits (142), Expect = 1e-24 Identities = 139/183 (76%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || || |||||| | || |||||||| |||||||| || ||| | Sbjct 72816 CTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCTG 72875 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| ||||| ||| ||||||| || | ||| |||||| |||| || ||||| Sbjct 72876 CTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGAC 72935 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 ||||| || |||||||| || || ||||||||||| || || ||| ||| || ||| | Sbjct 72936 CTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTCTCCGAGTACGCAATG 72995 Query 230402 GCC 230404 ||| Sbjct 72996 GCC 72998 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | || || ||||| ||||| ||||||||| || Sbjct 69884 CTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTT 69825 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || | ||||| || ||| | ||||| |||| ||| ||||| Sbjct 69824 CTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGACCAACCCGTTCGATTTCATGGAC 69765 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 | || || |||||||| || || ||||||||||| ||||| || Sbjct 69764 ATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGGGT 69721 >seq2399 Length=624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| ||||| || | |||||||||||||| | || || ||| Sbjct 263 CCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCG 204 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| | ||||| ||||| |||||||| Sbjct 203 AGGGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 160 >seq6239 Length=75403 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| || ||||| || || ||| | ||||| ||||| |||| || || || Sbjct 57659 CCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCA 57718 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| ||||| ||||| | ||||| ||||| |||||||| |||| Sbjct 57719 AGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTTCA 57767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046609807333792