Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7597 174 4e-38 seq1153 141 2e-28 >seq7597 Length=53330 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| ||||| || |||||| Sbjct 51334 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTTGAGTCGTCAGAC 51393 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || |||||||| ||||||||| Sbjct 51394 ACCATTGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAA 51453 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || || ||| | || || | || || ||| || Sbjct 51454 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCAGACTACAACATC 51513 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 51514 CAGAAGGAGTCTACCCTCCATCTTGT 51539 Score = 140 bits (154), Expect = 8e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || ||||| || ||||| ||| ||| || Sbjct 51562 CAGATCTTCGTGAAAACGCTTACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCCGAT 51621 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| || || || || || || ||||| Sbjct 51622 ACCATCGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 51681 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || || ||||| || ||||| |||| |||| ||||||| ||| | Sbjct 51682 CGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGGAC-CTTGTCCGATTACAACAT 51740 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || || || |||| Sbjct 51741 CCAGAAGGAGTCCACTCTCCACCTTG 51766 Score = 127 bits (140), Expect = 5e-24 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || | || || || || ||||| || ||||| || || || Sbjct 51843 CAAATCTTCGTGAAGACGTTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCGGAT 51902 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||| || || |||||||| |||||||| Sbjct 51903 ACCATCGATAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAG 51962 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || ||||||||||| ||||| ||||| || || || | || |||| | ||||| ||| | Sbjct 51963 CGTCTTATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGTAC-CTTGTCGGATTACAACAT 52021 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || || || |||| Sbjct 52022 CCAGAAGGAGTCGACCCTTCA-CTTG 52046 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || ||||| || || || | ||||| || || ||| Sbjct 52071 CAGATCTTTGTCAAGACCCTTACGGGAAAGACCATTACGTTGGAGGTCGAGTCTTCCGAC 52130 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||||||||| ||||| Sbjct 52131 ACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAG 52190 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || || || | || || |||| || ||| || Sbjct 52191 CGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGGCGTACGCTCTCCGACTACAACATC 52250 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 52251 CAGAAGGAGTCCACCCTCCATCTCGT 52276 >seq1153 Length=45894 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || ||||| |||||||| || || ||| Sbjct 1994 CAAATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGAC 1935 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| || |||||||| Sbjct 1934 ACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 1875 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | || ||| | || || ||| || Sbjct 1874 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTTTCGGACTACAACATC 1815 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1814 CAGAAGGAGTCGACCCTTCACCTCGT 1789 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||||||| | ||||| ||| || || Sbjct 2222 CAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCTTGGAGGTTGAATCGTCGGAT 2163 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||| ||||| || || || ||||||||||||||||| Sbjct 2162 ACAATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAGCAG 2103 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || ||||| || || | || || | || || ||| | Sbjct 2102 CGCCTGATCTTTGCTGGCAAGCAACTCGAGGACGGCCGCACGCTCTCTGACTACAACATT 2043 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 2042 CAGAAGGAGTCGACGCTCCACCTTGT 2017 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || |||||||||||||| || || ||| Sbjct 2789 CAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGAC 2730 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || |||||||| |||||||| Sbjct 2729 ACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 2670 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || || ||||| | || || ||||||||||| | Sbjct 2669 CGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGTCGTACCCTCTCCGATTATAACATT 2610 Query 178104 CAAAAAGA 178111 || || || Sbjct 2609 CAGAAGGA 2602 Score = 113 bits (124), Expect = 1e-19 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| |||||||| || || ||| Sbjct 2510 CAGATCTTTGTCAAGACGTTGACGGGGAAGACCATCACTCTCGAGGTCGAGTCTTCCGAC 2451 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 2450 ACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 2391 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||||| || ||||| | || |||| |||| || ||| | Sbjct 2390 CGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCAC-CTTGTCCGACTACAACAT 2332 Query 178103 CCAAAAAGA 178111 ||| || || Sbjct 2331 CCAGAAGGA 2323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203582400767712