Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7597 154 1e-32 seq1153 143 2e-29 seq2399 114 1e-20 seq6239 91.5 1e-13 >seq7597 Length=53330 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 51557 CCGCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 51498 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| || || || || ||||| | || Sbjct 51497 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCGGGAGGG 51438 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | ||| | | | ||||| |||||| || Sbjct 51437 ATACCCTCCTTGTCC-TGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGACGACTCAAC 51379 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 51378 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 51330 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || ||||| || ||| ||||||||| ||||| |||||||| Sbjct 52295 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 52236 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || ||| |||| || | |||||| || ||||| || |||||||| || |||| || Sbjct 52235 GAGCGTACGCCCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGG 52176 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | |||||| ||||| | Sbjct 52175 GATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGA 52117 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| || || || ||||| || ||||| || || ||||||||| Sbjct 52116 CCTCCAACGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATG 52067 Score = 120 bits (132), Expect = 3e-22 Identities = 156/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || ||| ||||||||| ||||| || ||||| | ||| ||| | || | Sbjct 51769 CACCAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTCCGCCCATCCT 51710 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | ||||||||||| ||||| |||| |||||| || || | ||||| || |||||||||| Sbjct 51709 CAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCC- 51651 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | | || ||| || || ||||| | || || || Sbjct 51650 TGAATCTTCGCCTTTACGTTGTCGATGGTATCGGAGGATTCGACCTCAAGAGTGATAGTC 51591 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| || ||||| |||||||| Sbjct 51590 TTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 51559 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || || ||| ||||| ||||| ||||| || Sbjct 51330 GCCGCCACGGAGACGGAGGACTAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCCGA 51271 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||||||| |||| |||||||||||||| || || ||||||||||| ||||| Sbjct 51270 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 51217 >seq1153 Length=45894 Score = 143 bits (158), Expect = 2e-29 Identities = 162/213 (76%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || |||||||||||||| ||||| |||||||| | |||||| | || | Sbjct 2303 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCT 2362 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | ||||||||||| ||||| ||||| ||||| ||||| | || | || |||||||||| Sbjct 2363 CAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC- 2421 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | | |||||| ||||| ||||| | || || || Sbjct 2422 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGAGTGATGGTC 2481 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||||| |||||| || || ||||||||| Sbjct 2482 TTCCCCGTCAACGTCTTGACAAAGATCTGCATG 2514 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || ||||| ||||||||||||||| ||||| ||| Sbjct 1999 CCACCACGGAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAG 2058 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||| || || ||||||||||| ||||||| || Sbjct 2059 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 2118 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| || | ||||| | ||| | | | || || ||| || || Sbjct 2119 ATACCCTCCTTATCC-TGGATCTTTGCCTTGACGTTGTCGATTGTATCCGACGATTCAAC 2177 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| |||||||| || ||||| ||||| || ||||| Sbjct 2178 CTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATTTGCAT 2225 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | || || || || || ||||||||| ||||| ||||| || Sbjct 1771 CCACCGCGTAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1830 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||||||||| || |||||||| ||||| | || Sbjct 1831 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1890 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| || | | | ||||| |||||| || Sbjct 1891 ATACCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATGGTGTCCGACGACTCGAC 1949 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| ||||| || ||||| Sbjct 1950 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATTTGCAT 1997 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || ||||||||||||||||||||||| ||||||||||| || | || || || Sbjct 2587 AGGTGGAGAGTGCTCTCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCCAGT 2646 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || || || ||||| ||||| | || | | |||||||||| ||| Sbjct 2647 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATC 2706 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || |||| || | | | ||||| |||||| ||||| | || || || || || Sbjct 2707 TTAGCCTTC-ACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCC 2765 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| || || |||||||| Sbjct 2766 GGTCAAAGTCTTGACAAAGATCTGCAT 2792 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| |||||| ||| ||||||||||| ||||| || Sbjct 2794 CCTCCGCGAAGACGGAGGACGAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCAGAA 2853 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||| |||||||| || || ||||| ||||| | ||| Sbjct 2854 AGAGTGCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 2913 Query 41756 A 41756 | Sbjct 2914 A 2914 >seq2399 Length=624 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||||||| ||||| |||||| | Sbjct 442 CCACCACGCAGACGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 383 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| ||||| ||||||||||| ||||| | |||| Sbjct 382 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 323 Query 41756 A 41756 | Sbjct 322 A 322 >seq6239 Length=75403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||| ||||||||| | || || |||||||||||||| || Sbjct 57508 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 57567 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 ||||| ||||| ||||| | ||||| ||| Sbjct 57568 GATCAGACGCTGCTGGTCGGGGGGAATGCT 57597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462248246137600