Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 116 8e-21 >seq6 Length=3889359 Score = 116 bits (128), Expect = 8e-21 Identities = 134/179 (75%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 230441 GTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 ||||| || |||||||||||| | | || ||| | ||||||||||| ||||| || ||| Sbjct 952075 GTCGCGCTCATTGGCATGAACTCGAACCTGATGCGTCAGTACATCGAGTTCGTCGCTGAC 952016 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559 || || | || || || || | ||||| |||||| | ||||||||| | || Sbjct 952015 CGTCTTCTCGTCGCCCTCGGCGATGAGAAGCACTACAACGTCACGAACCCCTTCGACTTC 951956 Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 ||||| | || ||||| || ||||||||||||||||| || |||||||| |||||| Sbjct 951955 ATGGACATGATCTCGCTCCAGGGGAAGACCAACTTCTTTGAGAAGCGTGTGTCTGACTA 951897 Score = 116 bits (128), Expect = 8e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||||| || || ||| | |||||||| |||||||| |||||||| | Sbjct 954988 CTCATTGGCATGAACGCAGACCTCATGTGTCAGTACATAGAATTCGTCGCCGACCGGCTG 955047 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || |||||||| ||| | | | ||| || || | |||||||| Sbjct 955048 CTCGTCGCCCTCGGGAACGAGAAACACTACGGCGCGACGAATCCATTCGACTTTATGGAC 955107 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||||| || || ||||||||||||||||| ||||| || Sbjct 955108 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 955151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823823806190