Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 145 8e-30 >seq6 Length=3889359 Score = 145 bits (160), Expect = 8e-30 Identities = 374/563 (66%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||| ||| || | ||||| || | | ||| || |||||||| || || | Sbjct 952236 CAGGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTGAGG 952295 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| || || ||||| | ||| || || | |||||| || ||||| || || Sbjct 952296 CCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAAAAG 952355 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 ||||||||||||| || || || | | ||||| ||| | | | || |||| ||| Sbjct 952356 ATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAGGCTGACTCCTTGTC-CGA 952414 Query 17144 -ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 ||||| | |||| || || || | ||| ||||| || || || ||||| | Sbjct 952415 GATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGGGATAGTCTCGATGGCATC 952474 Query 17203 AAATAATTTCTCTT--TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || | | ||| | | | | |||| | |||||||| |||||||| || |||| Sbjct 952475 GAAGAGGTGCTCGCGCTGTGCGG--GGTCCTTGATATACGTGTCGATGAGGAGCGAGTAC 952532 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 | || ||||| ||||||||||| ||||| || ||||| ||||| || || || || Sbjct 952533 GTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCC 952592 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 || || || | |||| || || | || || ||||| ||||| |||||| ||| Sbjct 952593 GCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTTGACGATACCGTCGGAGGCG 952652 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG---- 17436 ||||| ||||||| | ||| ||||| | ||| | || ||| | ||| Sbjct 952653 GCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCAT-CGTTGT--TGAGGCGGTTG 952709 Query 17437 --CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 |||||| | | ||| ||||| | |||| ||| || | |||||| || ||| | Sbjct 952710 TTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCAGAAGGATGCCTCG 952769 Query 17495 GCCTTTTTATACATATTCCAAAT 17517 ||||| || ||||| | ||| || Sbjct 952770 GCCTTCTTGTACATTTGCCAGAT 952792 Score = 86.0 bits (94), Expect = 6e-12 Identities = 286/441 (65%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| ||| || || || ||| || | ||||| || | | ||| || ||||| || Sbjct 954823 AACAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAG 954764 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || || | || |||||| || || ||||| | ||| || ||||||||||| ||||| Sbjct 954763 AACGTGAGACCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATCGCGGCGAAGGACCCG 954704 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG--TACG--TCGC 17130 || ||||| | |||||||||| || ||||||| | || || ||| ||| ||| Sbjct 954703 GAGAAGAAGACGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCTGCGAAGACGGAGCGC 954644 Query 17131 GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGT 17190 | | | || ||||| | | |||| ||||| || || | ||| || || Sbjct 954643 GAGTCGG---CG-ATCCAGCGCAGGGCCCAGTCGGCCTTGCGCGCGACGCAGGGGATGGT 954588 Query 17191 TTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAG 17250 | || || | || | | | | | ||||| | ||||| |||||||| Sbjct 954587 GTTGATCGCGTCGAACAGGAACGCGCGCTGCGCGGGGTCGCGGACGTACGTGTCGATGAG 954528 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 || |||| | || ||||| | |||||| || ||||| || ||||| ||||| || Sbjct 954527 GAGCGAGTACGTCTCCGAGTGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCG 954468 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 || || || || ||||| | |||| || || | || || ||||| ||||| || Sbjct 954467 CGCCTCGGCGGCCTGCACTTCGTTGGAGAACCGCTCGACGAGGTTCTCGTTGACGATCCC 954408 Query 17371 GTCGCTCGCGGCGAAAAACGC 17391 ||| |||||||| || || Sbjct 954407 GTCCGAGGCGGCGAAGAAGGC 954387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545515898840