Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03]
13 sequences; 37,433,966 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq6 145 8e-30
>seq6
Length=3889359
Score = 145 bits (160), Expect = 8e-30
Identities = 374/563 (66%), Gaps = 15/563 (3%)
Strand=Plus/Plus
Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023
|| ||||| ||| || | ||||| || | | ||| || |||||||| || || |
Sbjct 952236 CAGGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTGAGG 952295
Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083
|| |||||| || || ||||| | ||| || || | |||||| || ||||| || ||
Sbjct 952296 CCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAAAAG 952355
Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143
||||||||||||| || || || | | ||||| ||| | | | || |||| |||
Sbjct 952356 ATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAGGCTGACTCCTTGTC-CGA 952414
Query 17144 -ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202
||||| | |||| || || || | ||| ||||| || || || ||||| |
Sbjct 952415 GATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGGGATAGTCTCGATGGCATC 952474
Query 17203 AAATAATTTCTCTT--TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260
|| | | ||| | | | | |||| | |||||||| |||||||| || ||||
Sbjct 952475 GAAGAGGTGCTCGCGCTGTGCGG--GGTCCTTGATATACGTGTCGATGAGGAGCGAGTAC 952532
Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320
| || ||||| ||||||||||| ||||| || ||||| ||||| || || || ||
Sbjct 952533 GTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCC 952592
Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380
|| || || | |||| || || | || || ||||| ||||| |||||| |||
Sbjct 952593 GCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTTGACGATACCGTCGGAGGCG 952652
Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG---- 17436
||||| ||||||| | ||| ||||| | ||| | || ||| | |||
Sbjct 952653 GCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCAT-CGTTGT--TGAGGCGGTTG 952709
Query 17437 --CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494
|||||| | | ||| ||||| | |||| ||| || | |||||| || ||| |
Sbjct 952710 TTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCAGAAGGATGCCTCG 952769
Query 17495 GCCTTTTTATACATATTCCAAAT 17517
||||| || ||||| | ||| ||
Sbjct 952770 GCCTTCTTGTACATTTGCCAGAT 952792
Score = 86.0 bits (94), Expect = 6e-12
Identities = 286/441 (65%), Gaps = 8/441 (2%)
Strand=Plus/Minus
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
|||| ||| || || || ||| || | ||||| || | | ||| || ||||| ||
Sbjct 954823 AACAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAG 954764
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074
|| || | || |||||| || || ||||| | ||| || ||||||||||| |||||
Sbjct 954763 AACGTGAGACCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATCGCGGCGAAGGACCCG 954704
Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG--TACG--TCGC 17130
|| ||||| | |||||||||| || ||||||| | || || ||| ||| |||
Sbjct 954703 GAGAAGAAGACGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCTGCGAAGACGGAGCGC 954644
Query 17131 GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGT 17190
| | | || ||||| | | |||| ||||| || || | ||| || ||
Sbjct 954643 GAGTCGG---CG-ATCCAGCGCAGGGCCCAGTCGGCCTTGCGCGCGACGCAGGGGATGGT 954588
Query 17191 TTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAG 17250
| || || | || | | | | | ||||| | ||||| ||||||||
Sbjct 954587 GTTGATCGCGTCGAACAGGAACGCGCGCTGCGCGGGGTCGCGGACGTACGTGTCGATGAG 954528
Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310
|| |||| | || ||||| | |||||| || ||||| || ||||| ||||| ||
Sbjct 954527 GAGCGAGTACGTCTCCGAGTGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCG 954468
Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370
|| || || || ||||| | |||| || || | || || ||||| ||||| ||
Sbjct 954467 CGCCTCGGCGGCCTGCACTTCGTTGGAGAACCGCTCGACGAGGTTCTCGTTGACGATCCC 954408
Query 17371 GTCGCTCGCGGCGAAAAACGC 17391
||| |||||||| || ||
Sbjct 954407 GTCCGAGGCGGCGAAGAAGGC 954387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545515898840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |