Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq13 143 3e-29 >seq13 Length=2611572 Score = 143 bits (158), Expect = 3e-29 Identities = 242/345 (70%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCT-CTTGATCTCCCC 145982 || |||||||| ||| |||||| || | | | ||| || || | |||||| | | Sbjct 30918 GCGGGGTTCCATGCGCTGAGGATGATGCGACGG-TCTGTAGGGTCGTGCTTGATTTTGCG 30860 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTA 146042 || ||| ||||||||| ||||||| || ||| || | | | ||||| |||| Sbjct 30859 AATGCACTCCTGGAGCTGGTCGACGCCCTTGCCGGAGTAGTCGGCGTCGCAGTCCTCGTA 30800 Query 146043 CGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTC-CCCGGGCTCCC 146101 | || || ||||||| ||||||||| || |||||||| || ||||| ||| || | Sbjct 30799 CTGCGCGCCAAAGTGCCGCCACTGGAAACCATAGACGGGGCCGAGGTCGCCCTCGCGGCG 30740 Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161 ||| || || ||| | | |||||||| ||| ||||| ||||||||||||||| Sbjct 30739 -GTGTCCGAGGCCGCGCTTTTCAAGGAAGTCTTTGGAGCCGTTCCCGTCCCAGATCTTGA 30681 Query 146162 CGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221 |||| | |||||||||| |||||||||||| | || | ||||||| ||||| | Sbjct 30680 CGCCTTTGGCGGAGAGCTGTTTGGAGTCCGTGCAGCCGTGCACAAACCAGATGAGCTCCT 30621 Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| || || | |||| | ||||||||| || ||||||| Sbjct 30620 CGACGATGCCGCGGAGGAAGGTGCGCTTGGTGGTGAGGAGGGGGA 30576 Score = 96.9 bits (106), Expect = 4e-15 Identities = 211/315 (67%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||| | ||| | |||| || || |||| ||| ||||| | |||||||||| | | Sbjct 31383 CATTTTCATCGCTATGGTCGGATGCGGGTCGTACCCCTCGACGACAAAGTCCTCACTCGT 31324 Query 145605 GAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCT 145664 ||| ||||| ||| ||||||| || | | ||||| | | || || || || || | Sbjct 31323 GAACTCATCGATGCTCTCCACCTTCCGCGGCCACCTGATCTTCGGGAACGGACGCGGTGT 31264 Query 145665 CCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 145724 | | |||||| || | || ||||||| | | ||||||||||||||||| Sbjct 31263 GCGTGCGAGCTGGGTGCGGAGCGCGTCGACGTGGTCGCGATAGACGTGCGCGTCCCC--- 31207 Query 145725 GACGTGGATGAAGTCCCCGGGCTCGA---GGCCCGTGAGGTGGGCGACCATGTAGGTCAG 145781 || || || | | | | || ||| | | |||| ||| |||||||||| || || Sbjct 31206 GAGCTGAATCACGAGCTCATGCGCGATAGTGTCGGTGACGTGCGCGACCATGTGTGTGAG 31147 Query 145782 CAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTA 145841 || | ||| ||| || ||||| || | || ||||| | ||| | ||||| ||||| Sbjct 31146 TAGCGCGTACGAGGCGATATTGAATGGGATTCCGAGCCCAAGGTCGGCGGAGCGTTGGTA 31087 Query 145842 CAGCTGGCAGGAGAG 145856 || |||||||||| Sbjct 31086 CATGAGGCAGGAGAG 31072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076704112520