Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 5e-12 >seq9 Length=3088601 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 |||||| || ||||| ||||| | ||||| | ||||||||| ||| ||||| ||| | Sbjct 2856567 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAA 2856626 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 ||||| | ||| || ||| ||| | ||| |||||||| ||||| || || | Sbjct 2856627 GATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 2856686 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | ||| || || | ||| || | || |||||||||||||| || || || || Sbjct 2856687 GTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTCAC 2856746 Query 21164 AAATATTTGCAT 21175 ||| || ||||| Sbjct 2856747 AAAGATCTGCAT 2856758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||| || | |||| ||| |||||||| || ||||| ||||||| Sbjct 2856249 TTCCACCACGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 2856308 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | |||| || ||||| ||||| ||| | || || | ||||||||| | Sbjct 2856309 AGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAG 2856368 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| || || | | ||| || || | || Sbjct 2856369 GAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGA 2856428 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||| || || | || ||||| || || ||||| Sbjct 2856429 CCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 2856477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259133098308