Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq9 109 5e-19 seq8 84.2 2e-11 >seq1 Length=4437623 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || || | ||| | |||||||| || || |||||||||||| Sbjct 1911336 TACCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGG 1911277 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || || ||| ||||||| || ||||| || || | Sbjct 1911276 AAAGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCG 1911217 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || ||| || || | |||| |||||||| ||| | Sbjct 1911216 GGATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAA 1911157 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| ||| | ||| ||||| || || || || ||||| ||||||||| Sbjct 1911156 CCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1911107 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || |||||| ||||| Sbjct 1911824 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCA 1911765 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| || |||| | || ||||| ||||| || ||||| ||||| || Sbjct 1911764 AGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGG 1911705 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | | |||||| || | || | || ||| Sbjct 1911704 ATCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTG 1911645 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||| || || || ||||||||| Sbjct 1911644 CCCGTCAAAGTCTTCACGAAGATCTGCATG 1911615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||||| || || ||||||||||| || || || || || || Sbjct 1911545 ACCAAGATGCAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTC 1911486 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| ||||||||||||| || || || || || |||||||||||| Sbjct 1911485 AAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTG 1911426 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||| | | ||| ||||||| || | ||| || Sbjct 1911425 GATCTTCGCCTTGACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTT 1911366 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || || ||||| Sbjct 1911365 TCCGGTCAATGTCTTGACGAAGATTTGCAT 1911336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| || || || || ||||| | ||| || |||||| | Sbjct 1912035 CTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGCTTCCCAGCGAA 1911976 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCT 118665 |||||| |||||||| || || || ||||||||||||| |||| || || || || | Sbjct 1911975 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGT-ATCTTCGCCTTCACAT 1911917 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| || || | ||||||||| | || | ||||| ||||| || || || | Sbjct 1911916 TGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTGAGCGTCTTAA 1911857 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 1911856 CGAAGATCTGCAT 1911844 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||||| | ||||| ||||||||||| Sbjct 3824904 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTG 3824963 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 || || ||| |||| || |||||||| ||||| || |||| Sbjct 3824964 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGC 3825004 >seq9 Length=3088601 Score = 109 bits (120), Expect = 5e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||| || || |||||||| ||| | ||||| ||||| Sbjct 2856549 ACCAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTC 2856608 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || ||||| |||| |||||||| ||||| || || |||||||||||||| Sbjct 2856609 CAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTG 2856668 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | ||||||||||| || | || || Sbjct 2856669 AATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTT 2856728 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 2856729 GCCGGTCAAGGTCTTCACAAAGATCTGCAT 2856758 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || ||||||||||| | ||||| |||||||||||| || || ||| | Sbjct 2856058 CTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 2856117 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||| |||||||| ||||| || || ||||||||||| || || || || | Sbjct 2856118 AATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2856177 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| ||| ||||| | ||| | || || |||||||| || || || Sbjct 2856178 GTCGATCGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGAC 2856237 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 2856238 AAAGATCTGCAT 2856249 >seq8 Length=3112363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||||||||| ||||| |||||||||||||||| |||||| | || ||||||||||| Sbjct 1725684 GTCGACGGTGAACTTGATGGCCTGAGCGGCGGGGCGTGTGCGTAGGTAGTACATGCCCGT 1725625 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACA 132978 || || |||| |||| | || ||||| ||||||| || Sbjct 1725624 CTTGAGGCCCTTCTTCCACCCATAGAAGTGCATGCTCGTCA 1725584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830331264996