Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq1 114 1e-20 >seq9 Length=3088601 Score = 125 bits (138), Expect = 8e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | |||| ||||||||||| || || |||||||| | || || || | Sbjct 2856034 ACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACC 2856093 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| ||||| ||||||||||||| ||| | | |||||| Sbjct 2856094 ATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTT 2856153 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | | |||||| ||| || || || | |||| Sbjct 2856154 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAGGGTGA 2856212 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || || ||||| |||||||| |||||| Sbjct 2856213 TGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCATT 2856250 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || || |||| || | |||||| ||| Sbjct 2856562 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 2856621 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 || || || || ||||| || || | || | || |||||||||| ||| | || | || Sbjct 2856622 GCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTT 2856680 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | |||||| || || || |||| ||||||||| ||||| || | || Sbjct 2856681 GACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGT 2856740 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| |||||||| ||||| Sbjct 2856741 CTTCACAAAGATCTGCAT 2856758 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || |||||||| || || || Sbjct 2856286 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAA 2856345 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| || | | ||||||||| ||| | || | |||| Sbjct 2856346 GATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCC-TGAATCTTCGCCTTGACAT 2856404 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||||| || || | || || || || ||||| || ||||| | Sbjct 2856405 TGTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGA 2856464 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 2856465 CGAAGATCTGCAT 2856477 >seq1 Length=4437623 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||||||||| || || ||||| |||| ||| || || |||| || | |||| Sbjct 1912046 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGC 1911987 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || |||||||| ||||| ||||||||||| | || | || |||||||||| || || Sbjct 1911986 TTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTTC 1911927 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | | | | ||| ||| || || || || | ||||| ||||| || || Sbjct 1911926 GCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTG 1911867 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 1911866 AGCGTCTTAACGAAGATCTGCAT 1911844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | || ||||| |||| || |||||||| ||||| || Sbjct 1911526 TCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCAAAG 1911467 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||| ||||| | ||| | | ||||||||| ||| || |||| | Sbjct 1911466 ATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGACATTG 1911407 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || |||| |||||| || || || || | ||||| || Sbjct 1911406 TCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTTGACG 1911347 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 1911346 AAGATTTGCAT 1911336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817507079640